| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4219 |
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| Symbol | |
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| ID | 6411903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4524325 |
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| End bp | 4525485 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642714101 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001993190 |
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| Protein GI | 192292585 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.439503 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACGA CCACCCCGAC AACACCTGCA GATCCACGCG CCGTCCGCCG CAAGCGGCTG
GCGTGGTTCG GCATCCTGTT GGCCACGACC GCCGTCGCGG CAGGCGCCTG GGCTTATTTG
TCCAACCCCG CACTACGCCA CACCGACGAC GCCTATGTCG GCGGCCAGTT GGTACAGATC
ACCTCGGAAA TGTCCGGCGC CGTGACGCGC ATCCTCGCCG ACAACACCGA TTGGGTCGCG
GCCGGCGACG TCCTGGTCGA ACTCGATTCC ACCGATGCGC GGATCGAACT CGCCAGCGCC
AAGGCCGAAC TCGCGCAGGC GGTCCGCAGC GTCCGCGGCC TGTTTGCCAG CGACGCCCGC
TCCGACGCGG ACGTCCGTCT CCGGCTCGCC GAATTCAACA AGGCGCAGGG CGACCTCAAC
GTCAAGCAGA CGCTGGTGAG CACCGGCGCG GTGTCGCGCG AGAGTCTGCG TCACGCCAAC
GACGCGCTCA GCGCCGCACA GGCCGCGCTC GCTTCGGCTC AGCAGGCGCG CGCTCAGGCG
CTGGCGCTCG TCAACAACTC CACCCTGGCG TCGAACCCGC CGGTGCAAGT CGCTGCCGAA
CGCGTCCGCG CCGCCGCGCT GGCGATCGAA CGGACCAAGA TCACCGCTCC GGTCTCCGGC
ATGGTCGCGC AGCGCTCCAT CCAACTCGGC CGCCGCGTCG GCCCCGGCGA AAAGATGATG
ACGGTCGTCC CGCTCGACCG GCTGTGGATC GATGCCAACT TCAAGGAAGT ACAACTCCAC
GGCGTCTGCG TCGGACAGCC CGCCACGGTG ACGGCCGACA TCTATGGCCG ATCGGTGACT
TACCACGGCA CGGTGCGGGG CATCGAAGCC GGCACCGGCG CTGCGTTCGC TCTGCTGCCG
GCGCAGAACG CCACCGGCAA CTGGATCAAG GTGGTGCAGC GAACGCCGGT GAGGATCAGC
CTCGATCCCG CCGAACTAAT CCAGCATCCG CTGCGGATCG GCATGTCGGC GGAAGTCGAG
GTCGACACCG CGACCTGCGA TCCCGCAGCG GCGCACGCAA CGAGGCAACA GGAGCTGTCC
GCGATCCACG ACGCCCGGGC GGCCGCCGCC GATGCCGTGG TCCGGCAGGT CATCGCCGAC
AACATCGGAG CGGACCGATG A
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| Protein sequence | MTTTTPTTPA DPRAVRRKRL AWFGILLATT AVAAGAWAYL SNPALRHTDD AYVGGQLVQI
TSEMSGAVTR ILADNTDWVA AGDVLVELDS TDARIELASA KAELAQAVRS VRGLFASDAR
SDADVRLRLA EFNKAQGDLN VKQTLVSTGA VSRESLRHAN DALSAAQAAL ASAQQARAQA
LALVNNSTLA SNPPVQVAAE RVRAAALAIE RTKITAPVSG MVAQRSIQLG RRVGPGEKMM
TVVPLDRLWI DANFKEVQLH GVCVGQPATV TADIYGRSVT YHGTVRGIEA GTGAAFALLP
AQNATGNWIK VVQRTPVRIS LDPAELIQHP LRIGMSAEVE VDTATCDPAA AHATRQQELS
AIHDARAAAA DAVVRQVIAD NIGADR
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