| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4213 |
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| Symbol | |
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| ID | 6411897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4517121 |
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| End bp | 4518986 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642714095 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_001993184 |
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| Protein GI | 192292579 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.238618 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAGC TTAACCGCCG CAACGTGCTC GCTCTCGGCG TTGGCGCGCT GGCTGCCACG
CATCTCCGGG GCACCGCCGC CGCGGCCGAA GGCGAGACGA TCGCCCACGG CATGTCGGCT
TTCGGTGACC TGAAGTACCC GGCCGACTTC GCGCATTTCG ACTATGTCGA TCCGCGAACT
CCAAAAGGCG GACTGTTCTC CACGATCCCG TCGGTTCGGG CGTTCAACCA GTCGTTTCAG
ACGTTCAACT CGCTCAACGC CTATATTCTC AAAGGGGACG GCGCCCAGGG CATGGGGCTG
ACCTTCGCGA CGCTGATGGC GCGTGCCGGC GACGAGCCCG ACGCGATGTA CGGCTTCGCG
GCCTCCAAAG TGGCGATCTC TGCCGACGGC CTGGCCTATC GCTTCACGAT GCGGCCGGAA
GCACGTTTCC ACGACGGCAG CAAACTGACG GCGCGCGACG CCGCTTTCTC GCTGAACATC
TTGAAGGCGA AGGGCCACCC GATCGTCACG CAACAAATGC GCGACTTCAT CGAGGCTGTG
GCGACCGATG ACGCGACGCT GGTGGTGACC TTCAAGCCGA AGCGCGGCCG CGACGTGCCG
CTGTTCGTCG CCGGCCTGCC GCTGTTCTCG GAAACTTACT ATTCGAAACA GCCGTTCGAT
GAATCCACCA TGGATGTGCC GCTCGGGAGC GGGCCCTACA AGGTCGGACG GCTCGAATCC
GGTCGCTACA TCGAGTTCGA TCGGGTCAAG GATTGGTGGG GCGCGAAGCT GCCGGTGAAT
GTCGGGGCTT ACAATTTCGA CATCGTTCGG TTCGAGTTCT ATCGCGATCG CGACGTTGCG
TTCGAAGGCT TCACCGGGCG CAGCTATCTG TTTCGCGAGG AGTTCACCTC GCGGATCTGG
AACACCCGCT ACGATTTCCC CGCGATCCAT GACGGCCGCG TCAAGCGCGA GATCCTGCCG
GACGACACCC CGTCGGGCGC ACAGGGCTGG TTCATCAACA CCCGCCGCGA CAAGTTCAAG
GATCCGCGCG TCCGCGAGGC GCTCGGCTGC GCGTTCGATT TCGAGTGGAC CAACAAGACC
ATCATGTACG GCACCTATGC GCGCACGGTG TCGCCATTCC AGAATTCCGA CATGATGGCG
GTGGGCGCGC CGTCGCCCGA AGAGTTGGCG CTGCTCGAAC CGTTCCGCGG CAAGGTGCCC
GACGAAGTGT TCGGGACACC GTTCATACCG CCCGCATCTG ACGGCTCTGG ACAGGACCGG
GCGCTGCTGC GCCGGGGCGG GCAGCTGTTG AACGAGGCTG GCTTTCCGAT CAAGAACGGC
AAACGTCTGA CGCCTCAGGG GGAGCCGTTC CGGGTCGAAT TCCTGCTCGA AGAGCCGGCA
TTCCAGCCGC ACCATATGCC GTTCATCAAG AACCTCGGCA CGCTCGGCAT CGACGCCACG
TTGAGGCTGG TCGATCCGGT GCAACTGCGG GCGCGCCGTG ACGATTTTGA TTTCGATCTG
ACGATCGAGC GCTACAGCTT TTCGACCGTG CCGGGCGACG CGCTGCGCAA CTTCTTCTCG
TCGCAGGCGG CAGCCACCAA GGGCTCGAAC AATCTCGCCG GCATTTCCGA TCCGGCCATC
GACGCGATGA TCGATCAGGT GATCGCGGCC GACACCCGCA CCAAACTGGT TGTTGCGGCG
CGCGCGCTTG ATCGACTGAT CCGGGCTGGC CGTTATTGGG TGCCGCAATG GTACTCGGCC
TCGCACCGGC TGGCCTATTG GGACGTGTTC TCCCATCCGC CGAGTCTGCC GAAATACGCC
GGCGTCGGCG TGCCGGAGCT GTGGTGGGCG ACCGCCCCTG CGGCACCTGC CGGCCAAGGG
AAATAG
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| Protein sequence | MAQLNRRNVL ALGVGALAAT HLRGTAAAAE GETIAHGMSA FGDLKYPADF AHFDYVDPRT
PKGGLFSTIP SVRAFNQSFQ TFNSLNAYIL KGDGAQGMGL TFATLMARAG DEPDAMYGFA
ASKVAISADG LAYRFTMRPE ARFHDGSKLT ARDAAFSLNI LKAKGHPIVT QQMRDFIEAV
ATDDATLVVT FKPKRGRDVP LFVAGLPLFS ETYYSKQPFD ESTMDVPLGS GPYKVGRLES
GRYIEFDRVK DWWGAKLPVN VGAYNFDIVR FEFYRDRDVA FEGFTGRSYL FREEFTSRIW
NTRYDFPAIH DGRVKREILP DDTPSGAQGW FINTRRDKFK DPRVREALGC AFDFEWTNKT
IMYGTYARTV SPFQNSDMMA VGAPSPEELA LLEPFRGKVP DEVFGTPFIP PASDGSGQDR
ALLRRGGQLL NEAGFPIKNG KRLTPQGEPF RVEFLLEEPA FQPHHMPFIK NLGTLGIDAT
LRLVDPVQLR ARRDDFDFDL TIERYSFSTV PGDALRNFFS SQAAATKGSN NLAGISDPAI
DAMIDQVIAA DTRTKLVVAA RALDRLIRAG RYWVPQWYSA SHRLAYWDVF SHPPSLPKYA
GVGVPELWWA TAPAAPAGQG K
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