| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4205 |
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| Symbol | |
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| ID | 6411889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4508429 |
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| End bp | 4509403 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642714087 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001993176 |
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| Protein GI | 192292571 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.125721 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGGATT TTCTGATCGA GAAGTTCCAC GACGCGCGTT TCATGGCGAC GCTGCTCGCG
GCGATCGCTG CCAGCGCGAC GGTCTACACC CTCGTCATTC CGTTTTTCGT AGGCGAGACG
CTGGCCAAGC GAATGAAGGC CGTCGGCAGT GAACGCGAAC GCCTGCGGCA GCGCGAACGC
GATCGCCTTG CCAAAGCCGA GAAGGTGTCG CTACGGCAAG CGCCGAAGAA ATTCGTGGCG
CGCGTGGTGG AAGACTTCAA CCTCGCCAAA TGGCTGGCGC AAGAATCCGC TCGCGACAAG
CTGGTGATGG CCGGCTACCG CGGCCAGGCG CCCTACGTCA CCTTCCTGTT CTTCCGCATG
GTGATGCCGA TCGCGTTCGG CGCGGCCTCG GCGCTGTACG TGTTCGTCAT CGCGAATTTC
GACCAGCCGC TGACGATCAA GATCGGCATG TGCGTCGCCG CGATCTTCTT CGGCATGCAG
GCGCCGATGC TGTTTCTGAA GAACGCGATT CAGAAGCGTC AATTGTCCAT CAAGCGAGCG
TTTCCCGACG CACTCGACCT GCTGCTCATC TGCATCGAGT CCGGCATGTC GATCGAAACC
GCGTTCCGCC GGGTGTCGAT CGAAATCGGG TCGCAGTCGA TCCCGCTCGC CGAAGAATTC
ACCCTGACGA CCGCCGAACT GTCCTATCTG CAGGACCGCA AGCAGGCCTA CGAGAATCTG
GCGCTGCGCA CCGGCCTCGA CGGCGTGAAG TCGGTTTGTT TGGCGCTGCA GCAGTCAGAG
CGCTACGGCA CGCCGCTCGG TCAAAGCCTG CGGGTGATGG CGCAGGAAAA TCGCGACATG
CGGATGAACG AGGCCGAGAA GAAGGCGGCG GCGCTGCCGC CCAAGCTCAC CGTGCCGATG
ATCGTGTTCT TCCTGCCGGT GCTGTTCGTG GTGATCCTCG GCCCGACCGG CATTCGCATC
GCGGCGATGC AGTAA
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| Protein sequence | MLDFLIEKFH DARFMATLLA AIAASATVYT LVIPFFVGET LAKRMKAVGS ERERLRQRER
DRLAKAEKVS LRQAPKKFVA RVVEDFNLAK WLAQESARDK LVMAGYRGQA PYVTFLFFRM
VMPIAFGAAS ALYVFVIANF DQPLTIKIGM CVAAIFFGMQ APMLFLKNAI QKRQLSIKRA
FPDALDLLLI CIESGMSIET AFRRVSIEIG SQSIPLAEEF TLTTAELSYL QDRKQAYENL
ALRTGLDGVK SVCLALQQSE RYGTPLGQSL RVMAQENRDM RMNEAEKKAA ALPPKLTVPM
IVFFLPVLFV VILGPTGIRI AAMQ
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