| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4204 |
|---|
| Symbol | |
|---|
| ID | 6411888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 4507446 |
|---|
| End bp | 4508420 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642714086 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_001993175 |
|---|
| Protein GI | 192292570 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4965] Flp pilus assembly protein TadB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0804917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATGC AAACGCTCGC ACTCGGCTTC TTTGCCGCCA TCGCGGTCGG CGGTGTGGCA
TGGGTTTTCG TCTATCCGCT GCTGTCCGGA GAAAAGACCG TCGAACAGCG GCTGACCTTC
GTCGCACGCT CCACGCCCAC GGTGCGTCAA GCCGATCGCA CGCAGCGGTC GCGGCGCGAG
CAGATCGAGG GCTCTCTCAA AGAGATCGAG ACCCGCAACG AAAAGCAGAA GAACGTCCCG
CTGACCGCCA AGCTGTCGCA GGCAGGTCTC GACTGGACTC CCGGCAAGTT CGGCGTGGTT
TCGGCGTCGC TCGGCATCTT CATGCTGGGC ATCGCGATCA TTTTGGGCGC CAGCCTGCCG
GCCGCGGCCG GTCTTGGTTT CGCCGCCGGC TTCGGGTTGC CGCGCTGGAC CCTCGGCTAT
CTCAAGCGTC GCCGTGAGAA GAGGTTTCTT GCCGCCCTTC CCGACGCGGT CGACATCATC
GTTCGTGGTA TCAAGGCCGG CCTGCCATTG TTCGACTCGA TCAAGATGGT GGCCGCGGAT
TCACCGGAGC CGCTGCGGAG CGAATTCAAC GCCATTATCG AGACCCAGGC GATCGGCATG
CCGATCGGCG AGGCCTGCGC CCGGCTGTAT GAGCGGATGC CGATTCCCGA AGCGAATTTT
TTCGGCATCG TGATCTCGAT CCAGCAGAAA TCGGGCGGCA ACCTCTCGGA AGCGCTCGGA
AACCTGTCCA AGGTGCTGCG CGATCGCAAG AAGATGGCCG AGAAGATCCA GGCGATGTCG
ATGGAAGCCA AGGCATCAGC CGCAATCATT GGCTCGCTGC CGATCATCGT GATGATGCTG
GTCTATGTGA CCACTCCGGA CTACATCTCG CTGCTGTGGA CACATCCGAC CGGTCGCATC
CTGCTCGCGG CTTCGGCGCT GTGGATGTCG GCGGGCATCT TCGTGATGAA GAAGATGATC
AATTTCGACT TCTGA
|
|---|
| Protein sequence | MEMQTLALGF FAAIAVGGVA WVFVYPLLSG EKTVEQRLTF VARSTPTVRQ ADRTQRSRRE
QIEGSLKEIE TRNEKQKNVP LTAKLSQAGL DWTPGKFGVV SASLGIFMLG IAIILGASLP
AAAGLGFAAG FGLPRWTLGY LKRRREKRFL AALPDAVDII VRGIKAGLPL FDSIKMVAAD
SPEPLRSEFN AIIETQAIGM PIGEACARLY ERMPIPEANF FGIVISIQQK SGGNLSEALG
NLSKVLRDRK KMAEKIQAMS MEAKASAAII GSLPIIVMML VYVTTPDYIS LLWTHPTGRI
LLAASALWMS AGIFVMKKMI NFDF
|
|---|
| |