Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4203 |
Symbol | |
ID | 6411887 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4505979 |
End bp | 4507433 |
Gene Length | 1455 bp |
Protein Length | 484 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642714085 |
Product | type II secretion system protein E |
Protein accession | YP_001993174 |
Protein GI | 192292569 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0834137 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTTGGTA AGCGCGGACC GGAAAACGAA GTCAGGGCCC CGAAACCGGC GAGCTTCTCG CCGGAGCCGG CGATGCGCGC CGCTGAACCC AAGCCCGTCG TGTCTTCACC GCCGCTGGCA CCGGCACGCG CCCCTTCAGC GCCGCCGGTG GCAGTCGAAA CGCGCCGCTC CGAGAACTAC TACCAGGTCA AGGCGACGAT CTTCGGCGCG CTGATCGAAG CGATCGATCT GGCGCAGCTC GCGAAGCTCG ACGGCGAGTC GGCGCGCGAG GAAATCCGCG ACATCGTCAA CGAAATCATC GCGATCAAGA ACATCGTGAT GTCGATCGCC GAGCAGGAGG AACTGCTCGA CGACATCTGC AACGACGTGC TCGGCTACGG CCCGCTGGAG CCGCTGCTGT CCCGCGACGA CATCTCCGAC ATCATGGTCA ACGGCGCCGG CACGGTTTAC ATCGAAGTCG CCGGCCGGAT CCAACGCACC GGCATCCGGT TTCGCGACAA TCAGCAGCTC CTCAACATCT GCCAGCGCAT CGTCAGTCAG GTCGGCCGGC GCGTGGACGA ATCCTCGCCG ATCTGCGACG CGCGCCTTGC CGACGGCTCG CGCGTCAACG CCATTGTGCC GCCGCTGGCC ATCGACGGCC CCGCCCTCAC CATCCGTAAA TTTAAAAAGG ACAAACTGAC GCTAGACCAG TTGGTCAAGT TCGGCGCGAT CACGCCGGAG GGCGCTCAGA TCCTGCAGAT CATCGGCCGG GTCCGCTGCA ACGTGCTGAT CTCGGGCGGT ACCGGCTCGG GCAAGACCAC GCTTCTGAAC TGCTTGACCA ACTATATCGA CGACGACGAG CGCATCATCA CCTGCGAAGA CGCGGCCGAA CTGCAACTGC AGCAGCCGCA CGTGGTGCGC CTTGAAACCC GACCACCGAA TATCGAAGGC GAAGGCCAGA TCACGATGCG CGATCTGGTC CGCAACTGTC TGCGTATGCG TCCTGAGCGG ATCATCGTCG GCGAAGTCCG CGGACCCGAG GCATTCGACC TGTTGCAGGC GATGAACACC GGCCACGACG GCTCAATGGG CACGCTGCAT GCCAATAATC CGCGCGAAGC CCTGTCTCGT TGTGAATCGA TGATCACAAT GGGCGGCTTC GCACTCCCGT CGCGCACCAT CCGCGAGATG ATCTGCGCCT CGATCGACGT CATCATCCAA GCGGCGCGCC TGCGTGACGG CTCACGCCGC ATCACCCACA TCACCGAGGT GATGGGGATG GAAGGTGACA CCATCATCAC CCAGGACATC TTCGTCTACG ACCTGTTGGG CGAGGATGCC AACGGTCATA TCGTTGGCCG CCACCGCTCT ACCGGCATCG GTCGCCCGCG GTTCTGGGAA CGCGCCCGCT ATTTCGGCGA AGAGCAGCGA CTCGCCGCGG CGCTGGATGC CGCGGAGGTC GTGGTCAATT CATAA
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Protein sequence | MFGKRGPENE VRAPKPASFS PEPAMRAAEP KPVVSSPPLA PARAPSAPPV AVETRRSENY YQVKATIFGA LIEAIDLAQL AKLDGESARE EIRDIVNEII AIKNIVMSIA EQEELLDDIC NDVLGYGPLE PLLSRDDISD IMVNGAGTVY IEVAGRIQRT GIRFRDNQQL LNICQRIVSQ VGRRVDESSP ICDARLADGS RVNAIVPPLA IDGPALTIRK FKKDKLTLDQ LVKFGAITPE GAQILQIIGR VRCNVLISGG TGSGKTTLLN CLTNYIDDDE RIITCEDAAE LQLQQPHVVR LETRPPNIEG EGQITMRDLV RNCLRMRPER IIVGEVRGPE AFDLLQAMNT GHDGSMGTLH ANNPREALSR CESMITMGGF ALPSRTIREM ICASIDVIIQ AARLRDGSRR ITHITEVMGM EGDTIITQDI FVYDLLGEDA NGHIVGRHRS TGIGRPRFWE RARYFGEEQR LAAALDAAEV VVNS
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