Gene Rpal_4203 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4203 
Symbol 
ID6411887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp4505979 
End bp4507433 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content63% 
IMG OID642714085 
Producttype II secretion system protein E 
Protein accessionYP_001993174 
Protein GI192292569 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0834137 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTTGGTA AGCGCGGACC GGAAAACGAA GTCAGGGCCC CGAAACCGGC GAGCTTCTCG 
CCGGAGCCGG CGATGCGCGC CGCTGAACCC AAGCCCGTCG TGTCTTCACC GCCGCTGGCA
CCGGCACGCG CCCCTTCAGC GCCGCCGGTG GCAGTCGAAA CGCGCCGCTC CGAGAACTAC
TACCAGGTCA AGGCGACGAT CTTCGGCGCG CTGATCGAAG CGATCGATCT GGCGCAGCTC
GCGAAGCTCG ACGGCGAGTC GGCGCGCGAG GAAATCCGCG ACATCGTCAA CGAAATCATC
GCGATCAAGA ACATCGTGAT GTCGATCGCC GAGCAGGAGG AACTGCTCGA CGACATCTGC
AACGACGTGC TCGGCTACGG CCCGCTGGAG CCGCTGCTGT CCCGCGACGA CATCTCCGAC
ATCATGGTCA ACGGCGCCGG CACGGTTTAC ATCGAAGTCG CCGGCCGGAT CCAACGCACC
GGCATCCGGT TTCGCGACAA TCAGCAGCTC CTCAACATCT GCCAGCGCAT CGTCAGTCAG
GTCGGCCGGC GCGTGGACGA ATCCTCGCCG ATCTGCGACG CGCGCCTTGC CGACGGCTCG
CGCGTCAACG CCATTGTGCC GCCGCTGGCC ATCGACGGCC CCGCCCTCAC CATCCGTAAA
TTTAAAAAGG ACAAACTGAC GCTAGACCAG TTGGTCAAGT TCGGCGCGAT CACGCCGGAG
GGCGCTCAGA TCCTGCAGAT CATCGGCCGG GTCCGCTGCA ACGTGCTGAT CTCGGGCGGT
ACCGGCTCGG GCAAGACCAC GCTTCTGAAC TGCTTGACCA ACTATATCGA CGACGACGAG
CGCATCATCA CCTGCGAAGA CGCGGCCGAA CTGCAACTGC AGCAGCCGCA CGTGGTGCGC
CTTGAAACCC GACCACCGAA TATCGAAGGC GAAGGCCAGA TCACGATGCG CGATCTGGTC
CGCAACTGTC TGCGTATGCG TCCTGAGCGG ATCATCGTCG GCGAAGTCCG CGGACCCGAG
GCATTCGACC TGTTGCAGGC GATGAACACC GGCCACGACG GCTCAATGGG CACGCTGCAT
GCCAATAATC CGCGCGAAGC CCTGTCTCGT TGTGAATCGA TGATCACAAT GGGCGGCTTC
GCACTCCCGT CGCGCACCAT CCGCGAGATG ATCTGCGCCT CGATCGACGT CATCATCCAA
GCGGCGCGCC TGCGTGACGG CTCACGCCGC ATCACCCACA TCACCGAGGT GATGGGGATG
GAAGGTGACA CCATCATCAC CCAGGACATC TTCGTCTACG ACCTGTTGGG CGAGGATGCC
AACGGTCATA TCGTTGGCCG CCACCGCTCT ACCGGCATCG GTCGCCCGCG GTTCTGGGAA
CGCGCCCGCT ATTTCGGCGA AGAGCAGCGA CTCGCCGCGG CGCTGGATGC CGCGGAGGTC
GTGGTCAATT CATAA
 
Protein sequence
MFGKRGPENE VRAPKPASFS PEPAMRAAEP KPVVSSPPLA PARAPSAPPV AVETRRSENY 
YQVKATIFGA LIEAIDLAQL AKLDGESARE EIRDIVNEII AIKNIVMSIA EQEELLDDIC
NDVLGYGPLE PLLSRDDISD IMVNGAGTVY IEVAGRIQRT GIRFRDNQQL LNICQRIVSQ
VGRRVDESSP ICDARLADGS RVNAIVPPLA IDGPALTIRK FKKDKLTLDQ LVKFGAITPE
GAQILQIIGR VRCNVLISGG TGSGKTTLLN CLTNYIDDDE RIITCEDAAE LQLQQPHVVR
LETRPPNIEG EGQITMRDLV RNCLRMRPER IIVGEVRGPE AFDLLQAMNT GHDGSMGTLH
ANNPREALSR CESMITMGGF ALPSRTIREM ICASIDVIIQ AARLRDGSRR ITHITEVMGM
EGDTIITQDI FVYDLLGEDA NGHIVGRHRS TGIGRPRFWE RARYFGEEQR LAAALDAAEV
VVNS