| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4182 |
|---|
| Symbol | ureC |
|---|
| ID | 6411866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4485650 |
|---|
| End bp | 4487362 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642714064 |
|---|
| Product | urease subunit alpha |
|---|
| Protein accession | YP_001993153 |
|---|
| Protein GI | 192292548 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0804] Urea amidohydrolase (urease) alpha subunit |
|---|
| TIGRFAM ID | [TIGR01792] urease, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCACCA GGATTTCACG TTCCGTCTAT GCCGACATGT TCGGCCCGAC CACCGGCGAC
CGCGTCCGGC TCGCCGACAC CGATCTGATC ATCGAGGTCG AGAAGGATCT CACCACCTAT
GGCGAGGAGG TGAAGTTCGG CGGCGGCAAG GTGATCCGCG ACGGCATGGG CCAGTCGCAG
GTGACCAACA AGGACGGCGC CGCCGACACC GTGATCACCA ACGCGCTGAT CGTCGACCAC
TGGGGCATCG TCAAGGCCGA CGTCGCCATC ACCGCCGGCG TGATCACCGC GATCGGCAAG
GCCGGCAATC CGGACGTTCA GCCGAATGTC GACATCATCA TCGGCCCGGG CACCGACGTG
ATCGCCGGTG AGGGCAAGAT TCTCACCGCC GGCGGGTTCG ACAGCCACAT CCATTTCATC
TGCCCGCAGC AGATCGAGCA TGCGCTGATG AGCGGCGTCA CGACGATGCT AGGCGGCGGC
ACCGGCCCGT CGCACGGCAC GTTTGCGACG ACGTGTACGC CGGGCCCGTG GCACATCGGC
CGGATGATTC AGTCGTTCGA TGCGTTCCCG GTCAATCTCG GCATCTCAGG CAAGGGCAAC
GCCGCGCTGC CCGGCCCGCT GAAGGAGATG ATCGAAGGCG GCGCCTGCGC GCTGAAGCTG
CACGAGGACT GGGGCACGAC GCCGGCGGCG ATCGACAACT GTCTCAGCGT CGCCGACGAC
TACGACATCC AGGTGATGAT CCACACCGAC ACGCTCAACG AGTCGGGTTT CGTCGAAGAC
ACCGTGAAGG CGTTCAAGGG GCGCACCATC CACGCCTTCC ACACCGAAGG CGCCGGCGGC
GGCCACGCGC CGGACATCAT CAAGGTCGCG AGCCTCGAAA ACGTGCTGCC GTCGTCGACT
AATCCGACCC GGCCGTTCAC CAAGAACACC ATCGACGAGC ATCTCGACAT GCTGATGGTG
TGCCACCATC TCGACCCGTC GATCGCGGAA GACTTGGCCT TCGCCGAGAG CCGTATCCGG
AAAGAGACGA TCGCGGCCGA GGACATCCTG CACGACCTCG GTGCGCTGTC GATGATGTCG
TCGGATAGTC AGGCCATGGG CCGGCTCGGC GAAGTGATCA TCCGCACCTG GCAGACCGCC
GACAAGATGA AGAAGCAGCG CGGCGCGCTG CCGCAGGACT CGGCGCGCAA CGACAATTTC
CGGGTCAAGC GCTACATCGC CAAGTACACC ATCAACCCGG CGATCGCGCA CGGCGTGTCG
AAGCTGATCG GCTCGGTAGA GACCGGCAAG ATGGCCGACC TGGTGCTGTG GTCGCCGGCG
TTCTTCGGCG TCAAGCCGGA CTGCATCATA AAGGGCGGCA GCATCGTCGC GGCGCCGATG
GGCGATCCCA ACGCCTCGAT CCCGACGCCG CAGCCGGTGC ACTATCAGCC GATGTTCGGC
GCCTACGGCA AGGCGCTGAC CGTGTCGTCG GTGGTGTTCA CATCGCAGGC GGCAGCCGCC
GGCAATCTCG CCCGCGACCT CGGCATCGCC AAGACGCTGG TTCCGGTCAG CAACGTCCGC
GGCGGCATTT CCAAGAAGAG CATGATCCAC AACGACGCCA CGCCGAAGCT CGAAGTCGAT
CCCGAGACCT ACGAAGTCCG CGCCGACGGC GAACTGCTCA CCTGCGCCCC GGCCGAAGTG
CTGCCGCTGG CGCAGCGCTA CTTCATGTTC TGA
|
|---|
| Protein sequence | MSTRISRSVY ADMFGPTTGD RVRLADTDLI IEVEKDLTTY GEEVKFGGGK VIRDGMGQSQ
VTNKDGAADT VITNALIVDH WGIVKADVAI TAGVITAIGK AGNPDVQPNV DIIIGPGTDV
IAGEGKILTA GGFDSHIHFI CPQQIEHALM SGVTTMLGGG TGPSHGTFAT TCTPGPWHIG
RMIQSFDAFP VNLGISGKGN AALPGPLKEM IEGGACALKL HEDWGTTPAA IDNCLSVADD
YDIQVMIHTD TLNESGFVED TVKAFKGRTI HAFHTEGAGG GHAPDIIKVA SLENVLPSST
NPTRPFTKNT IDEHLDMLMV CHHLDPSIAE DLAFAESRIR KETIAAEDIL HDLGALSMMS
SDSQAMGRLG EVIIRTWQTA DKMKKQRGAL PQDSARNDNF RVKRYIAKYT INPAIAHGVS
KLIGSVETGK MADLVLWSPA FFGVKPDCII KGGSIVAAPM GDPNASIPTP QPVHYQPMFG
AYGKALTVSS VVFTSQAAAA GNLARDLGIA KTLVPVSNVR GGISKKSMIH NDATPKLEVD
PETYEVRADG ELLTCAPAEV LPLAQRYFMF
|
|---|
| |