| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4167 |
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| Symbol | |
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| ID | 6411851 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4468638 |
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| End bp | 4470404 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714049 |
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| Product | malto-oligosyltrehalose trehalohydrolase |
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| Protein accession | YP_001993138 |
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| Protein GI | 192292533 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.423754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCTCC GCAGTTTCGG GCCGCGTCTC ACCGGTAACG GCGTCGAATT TCGCATCTGG
GCGCCGAACG CGAAACGTGT CGATGTCGTG CTCGACCGTC CGCATCCGAT GCGGCGCGAC
GCCAAAGGTT GGTACACCAC CCACATCGAC GGCATCGGCG CCGGCGCGCG CTATCGCTTC
CTGATCGACG GCAGCCTCGA TGTACCGGAC CCGGCCTCGC TGTTTCAGCC CGAGGATCTG
GCCGGGCCGA GCGAAGTGAT CGACCACGCC GCATATCAAT GGCGCGCCGA GGATTGGCGA
GGGCGGCCCT GGGCCGAAAC CGTGCTGCTC GAAACCCATG TCGGCACCTT CACGCCGGAG
GGCAGCTTCC GCGCGATGAT CGACAAGCTC GACCATCTGG TCGACACCGG CATCACCGCG
CTGGAATTGA TGCCGCTCGC CGATTTCCCC GGCACGCGCA ATTGGGGCTA CGACGGCGTG
CTGTGGTATG CGCCGGACAG CGCCTATGGC CGTCCCGAGG ATCTCAAGGC GCTGATCGAC
GAGGCGCATC TGCGCGGCCT GATGGTGTTC CTCGACGTCG TCTATAACCA TTTCGGCCCC
GAAGGGAATT ACCTCGGCCA ATACGCACCC GGGTTCTTCT CCGATTCGCA CACGCCGTGG
GGCAACGGCA TCAACTACTA CGTCGAGCAG GTCCGCGCCT TCGCGATCGA GAACGCGTTG
TACTGGTTGG GCGATTATCG TTTCGACGGT CTGCGGCTCG ACGCGGTGCA TGCGATCCCC
GATCAGGGCG AAATCCCGAT GCTGGACGAG CTGTCGCGCG AAGTCGGCCG GCTCGCCGCG
GAGACCGGGC GCTACGTGCA TCTGGTGCTC GAGAACGACG ACAACACCGC CGCCGTGCTC
GATCCGGTCA CCCATCCGCC GCGGGGGCAA TATCGCGCGC AATGGAACGA CGACTACCAC
CACGCCTGGC ACGTCGCGCT GACCGGCGAG ACTCACGGCT ACTATTCAGA TTACGCCAAT
GCGCCGCTGG CGCATCTTGC CCGCGCGCTC GGCTCCGGCT TCGTATTTCA GGGCGAGCCT
TCGGAGCATC GCGGCGGCCA GCCGCGCGGC GAACCGAGCG GAGACCTCGT GCCGCTCGCC
TTCATCAACT TCCTGCAGAA CCACGATCAG ATCGGCAACC GCGCGCTCGG AGACCGGTTG
GAAAGCCTGG TCAAGCCGCA GGCGATCGAA GCGGCGCTCG CCGTCACGCT GCTGGCGCCG
ACGGTGCCGA TGCTGTTCAT GGGCGAGGAA TGGGGATCGC AGGCGCCGTT CCCGTTCTTC
TGCGATTTTC AAGGTGATCT TGCCGAAGCG GTGCGGGCCG GACGGCGCAA GGAATTCGCC
GGCGCCTACA AAGAGTACGG CAACGAGGTC CCCGATCCGC TCAGCAAGGA CGCGTTCGAC
AGCGCCGTGC TCGATTGGCA CGAGCGCGAC CAGGGCCGCG GCGCCGCGCG TCTGGCGCTG
GTCAAGCGCC TGCTCGCCAT CCGCCACCGC GAGATCGTGC CGCGGCTTGA CAGCTCGCGG
TTCGGCGACG CTCGGATCAC CGGCGACGGC CTGCTGAAGG CATTCTGGCG GCTCACCGAC
GGTGCGACGC TCGAACTCGT CGCCAATCTG TCGGACGACG AACGTGACGG CGGGGCGCCA
CCCGCGGCGG GAACGATTCT ATGGGGCGGC GATTGGAACC GGATCATTCC GCCTTGGGCG
GTGTCCTGGC GCCTCGAGCA TCCGTAA
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| Protein sequence | MTLRSFGPRL TGNGVEFRIW APNAKRVDVV LDRPHPMRRD AKGWYTTHID GIGAGARYRF
LIDGSLDVPD PASLFQPEDL AGPSEVIDHA AYQWRAEDWR GRPWAETVLL ETHVGTFTPE
GSFRAMIDKL DHLVDTGITA LELMPLADFP GTRNWGYDGV LWYAPDSAYG RPEDLKALID
EAHLRGLMVF LDVVYNHFGP EGNYLGQYAP GFFSDSHTPW GNGINYYVEQ VRAFAIENAL
YWLGDYRFDG LRLDAVHAIP DQGEIPMLDE LSREVGRLAA ETGRYVHLVL ENDDNTAAVL
DPVTHPPRGQ YRAQWNDDYH HAWHVALTGE THGYYSDYAN APLAHLARAL GSGFVFQGEP
SEHRGGQPRG EPSGDLVPLA FINFLQNHDQ IGNRALGDRL ESLVKPQAIE AALAVTLLAP
TVPMLFMGEE WGSQAPFPFF CDFQGDLAEA VRAGRRKEFA GAYKEYGNEV PDPLSKDAFD
SAVLDWHERD QGRGAARLAL VKRLLAIRHR EIVPRLDSSR FGDARITGDG LLKAFWRLTD
GATLELVANL SDDERDGGAP PAAGTILWGG DWNRIIPPWA VSWRLEHP
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