| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4166 |
|---|
| Symbol | |
|---|
| ID | 6411850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 4466560 |
|---|
| End bp | 4468641 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642714048 |
|---|
| Product | glycogen debranching enzyme GlgX |
|---|
| Protein accession | YP_001993137 |
|---|
| Protein GI | 192292532 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.830683 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTCA CCGCCGGAAC CGACTCCCGT CTCGGAGCGA CCTGGGACGG GCGCGGCACC
AACTTCGCCC TGTTCTCCGC CAACGCTCAC AAGGTGGAGC TCTGCCTGTT CGACGCCCAG
GGCCGGCGCG AGCTGGAACG GATCGAACTG CCGGAGCGCA CCGAAGACGT CTGGCACGGC
TACCTCAACG ACGTCTCGCC CGGGCAACTA TACGGCTATC GGGTGCATGG CCCGTACGAT
CCCGATCGCG GCCATCGCTT CAACGCTCAC AAGCTGCTGC TCGACCCCTA TGCGAAGCGG
CTGAACGGAC GGCTGGTGTG GAGCGAGGCG CACTTCGCCT ATCGCACCGG CTCGCCACGC
GAGGACCTGT CATTCGACCG CCGAGACAAC GCGCGCGGCA TGCCGAAGGC CGTCGTGGTC
GACGAGACCG TCGGCAGCGG CCGCCGCGAG ACGCGGCCCG GCGTGCGCTG GGAAGACACC
ATCGTTTACG AGGCCCACGT CAAAGGCCTG ACCCAGCTTC GCGATGATGT GCCGCCGGGA
CTGCGCGGCA CCTTCGGCGG CCTCGCCTGC CCGACCATGA TCGCACATTT GAAGCGGCTC
GGCGTCACCA CGATTGAACT TTTGCCGGTC CAAGGCTTTG TCGATGACCG CGTCCTGGTC
GAGAAGAAGC TTGTGAACTA CTGGGGATAC AACACCATCT CGTTCTTCGC ACCGGAGGCC
CGTTATGCGC CGGACAAAGA CAATCCACTG GACTCGTTCC GCACCACCGT GGCGCGGCTG
CACGATGCCG GCATCGAGGT GCTGCTCGAT GTGGTCTACA ACCACACCGC CGAGGGCAAT
CATCTCGGGC CCACGCTGTC GTTCCGCGGC ATCGACAACG CCTCGTACTA CTGGCTGAAG
CCCGACAACC CGCGCTACTA CGACGATTTC ACCGGGTGCG GCAATTCGAT GAACCTCACC
CATCCGCGGG TACTGCAGAT GGTGATGGAC AGCCTGCGCT ACTGGGTCGA AGTCTGCCAC
GTCGATGGCT TTCGGTTCGA CCTCGCCACC ACGCTGGCGC GAGGCTCGAA CGGCTTCGAT
CGCAACTCGG GTTTCTTCAC CGCGATCCGT CAGGATCCGA TCCTGGCAGG CGTCAAGCTG
GTCGCCGAGC CGTGGGATCT CGGCATGGGC GGCTATCAGG TCGGTGCGTT CCCGTCGCAA
TGGTCGGAGT GGAACGACCG CTATCGCAGC GTGATGCGAC GTTACTGGAG CGGCGAAGGC
AGCCTGATCG GCGAAGTGTC GCGGCGCATG ACGGGCTCGT CCGATATGTT CAATCGCGAC
GGCAGGATGC CGCGCGCCAG CATCAACCAC GTCACCGTGC ACGACGGCTT CACGCTCGCC
GACCTGTTCA GCTACGAGCG CAAGCACAAC GTTGCCAACG GTGAGGACAA CCGCGACGGC
TCCAACGACA ATCACAGCAT CAACTGCGGC GTCGAAGGTC CGACCGACGA TCCGAAGATC
CTTGGGATGC GTCGCCAGCT CCGCAAGAAC CAGCTCGCCT GCCTGTTCCT GGCGCAGGGC
GTGCCGCTGC TGTTGGCCGG CGACGAGGTC GGCAATTCGC AGGCCGGCAA CAACAACGCC
TATTGCCAGG ACAACGAGAT CGGCTGGGTC GGCTGGGACG GGACCAACAC CGAAGACGAC
ATGGTGGAAT TCGTCGGACT GATGACCGAT ATCCGCCGCC GCTTCCCGCA GCTTCGCTCG
CGGCGCTGGC TCGACGGACG CCGCGCCGAC GGCTCCTACG GCGTGCTGTG GCTGACGCCG
TCCGCCGCCG AGATGACCGA TCAGGATTGG GCGTTCCCGG ATGGCCGCTT CCTGGCTTAC
CTGCTCAGCC CGAGCGAGCC GGGCGGCAGC GCGATCTTCA TCGTGCTGAA TTCGGGCGTG
CAGGAGATCG AATTCCACCT GCCGAAGCTG CCGGAATATC AGACCTGGAA AGAACTTTTC
GACACCACCA AGAACACCGT GCAGGTGGCG ACGCTGGGCT GCGGCAATCC GATGATCGCG
CCGCCCCGCT CCGTGCTGGC GTTCTCCGGG ACGACGGAAT GA
|
|---|
| Protein sequence | MRLTAGTDSR LGATWDGRGT NFALFSANAH KVELCLFDAQ GRRELERIEL PERTEDVWHG
YLNDVSPGQL YGYRVHGPYD PDRGHRFNAH KLLLDPYAKR LNGRLVWSEA HFAYRTGSPR
EDLSFDRRDN ARGMPKAVVV DETVGSGRRE TRPGVRWEDT IVYEAHVKGL TQLRDDVPPG
LRGTFGGLAC PTMIAHLKRL GVTTIELLPV QGFVDDRVLV EKKLVNYWGY NTISFFAPEA
RYAPDKDNPL DSFRTTVARL HDAGIEVLLD VVYNHTAEGN HLGPTLSFRG IDNASYYWLK
PDNPRYYDDF TGCGNSMNLT HPRVLQMVMD SLRYWVEVCH VDGFRFDLAT TLARGSNGFD
RNSGFFTAIR QDPILAGVKL VAEPWDLGMG GYQVGAFPSQ WSEWNDRYRS VMRRYWSGEG
SLIGEVSRRM TGSSDMFNRD GRMPRASINH VTVHDGFTLA DLFSYERKHN VANGEDNRDG
SNDNHSINCG VEGPTDDPKI LGMRRQLRKN QLACLFLAQG VPLLLAGDEV GNSQAGNNNA
YCQDNEIGWV GWDGTNTEDD MVEFVGLMTD IRRRFPQLRS RRWLDGRRAD GSYGVLWLTP
SAAEMTDQDW AFPDGRFLAY LLSPSEPGGS AIFIVLNSGV QEIEFHLPKL PEYQTWKELF
DTTKNTVQVA TLGCGNPMIA PPRSVLAFSG TTE
|
|---|
| |