| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4161 |
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| Symbol | |
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| ID | 6411845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4454933 |
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| End bp | 4456741 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642714043 |
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| Product | glycoside hydrolase 15-related |
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| Protein accession | YP_001993132 |
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| Protein GI | 192292527 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0712093 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCCGAGCC CGATCGAAGA CTACGCGCTG ATCGGCGACT GCGAGACCGC AGCCCTGGTC
GGCCGCGATG GCTCGATCGA CTGGCTGTGC TGGCCGTCGT TCGATTCCGA GGCCTGTTTC
GCAGCGCTGC TCGGCAATGA AGACAACGGC CGCTGGCAGA TCGCGCCGGC CGACGAAGTC
GTGCGTTGCA GCCGGCGCTA TCGCGGCGAC AGCCTGATCC TCGAAACCAC GTTCGAAACC
GCGACCGGCA GCATCACGCT GATCGACTTC ATGCCGCCAC GCGGCTCAGC CTCCGATGTC
GTCCGCCTGG TGCGGGGCGA TCGCGGCCGG GTCAAGGTGG CGATGCAGCT GGTGATCCGG
TTCGGCTACG GCGTGGCAAT CCCGTGGGTG CGGCGGGCCG ACGACGGCGC GGTGCTGGCG
GTCGGTGGCC CCGACATGCT GGCGCTCAGG ACGCCGGTGG CGACCCACGG CAAGGACATG
ACCACGGTCG CCGAGTTCGA AGTCGGCGAG GGGGATCAGA TCCCGTTCGT GATGACCTAC
GGGCCGTCGC ATCTGCCGGT GCCGGAGGCG ATCGACCCGA TCGCGGCGCT GAAGGACACC
GAGGATTTCT GGGCCGAATG GTCCGGCCGC TGCACCTATC AGGGCGAATA TCGCGAGCTG
GTGATGCGGT CGTTGATCAC GCTGAAGGCG CTGACCTTCG CGCCATCGGG CGGCATCGTC
GCGGCGCCGA CCACCTCGCT GCCGGAGAAG CTCGGCGGCT CGCGCAATTG GGACTACCGG
TTCTGCTGGC TCCGTGACGC CACCTTCACG CTGTTCGCGC TGATGAACAA CGGTTACACC
GAAGAGGCCG CGGCCTGGCA CGATTGGCTG CTGCGCGCGG TCGCCGGCAA TCCGGCCAGC
ATGCAGATCA TGTACGGTAT CTACGGCGAA CGCCGGCTGC TCGAATGGCA GGCCGATTGG
CTCGCCGGCT ATCAGGGCGC GCAGCCGGTG CGGATCGGCA ACGCCGCACA CGCGCAGCTG
CAGCTCGACG TCTATGGCGA ACTGATCGAC GCCTTCCATC AATGGCGCAA CGCGGATCTC
GCGCTCGATG GCGAGTCCTG GGCGCTGGAG TGCAAGGTGC TGCAGCATCT CGCCACGATC
TGGGACCAGC CCGACAGCGG CATCTGGGAG CGGCGCGGTG CCCGCCAGCA CTACGTCTTC
TCCAAGGTCA TGACCTGGGT GGCGTTCGAT CGTGGCATCA AGAGCGCGGA GAAGTTCGGT
CTGAAGGCGC CGGTCGCCGA GTGGCGCGCC TTGCGCGAGA AAATTCACGC GGACGTCTGC
GCCAATGGCT TCGATGTCGA GCAGAATGCC TTCGTCGAGC ACTATGGCGC CAAGGTGCTG
GACGCTTCGG TGCTGCTGAT CCCGGCGGTC GGCTTCCTGC CGCCGCGGGA TCCGCGGGTG
CTCGGCACGC TGGAGGCAAT CGAGCGCAAC CTGATGAGCG ACGGCTACGT GCTGCGCCAC
GATCCGCGCG AGAATCAGTA TCCGACCGAG ACGGAGGAGG GCGCGTTCCT GGCCTGCAGC
CTATGGCTCG CCGATGCCTA TGTGCTGGCC GGAGAGATCG ACCGCGCCAA GGAGCTGTTC
GATCGTGTCG CCGGCATCGC CAACGATCTC GGCCTGCTGG CCGAGGAATA CGACACCGCA
CAACGGCGGC AGACCGGCAA TTTCCCGCAG GCGCTGACCC ACATCGCGCT GATCAACACC
GCCAACAACC TCTCGGCCGC GAAGGCCGCG ACGCAAAAGC CGGCGATGCA GCGATCGAAG
CAGAGCTAA
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| Protein sequence | MPSPIEDYAL IGDCETAALV GRDGSIDWLC WPSFDSEACF AALLGNEDNG RWQIAPADEV
VRCSRRYRGD SLILETTFET ATGSITLIDF MPPRGSASDV VRLVRGDRGR VKVAMQLVIR
FGYGVAIPWV RRADDGAVLA VGGPDMLALR TPVATHGKDM TTVAEFEVGE GDQIPFVMTY
GPSHLPVPEA IDPIAALKDT EDFWAEWSGR CTYQGEYREL VMRSLITLKA LTFAPSGGIV
AAPTTSLPEK LGGSRNWDYR FCWLRDATFT LFALMNNGYT EEAAAWHDWL LRAVAGNPAS
MQIMYGIYGE RRLLEWQADW LAGYQGAQPV RIGNAAHAQL QLDVYGELID AFHQWRNADL
ALDGESWALE CKVLQHLATI WDQPDSGIWE RRGARQHYVF SKVMTWVAFD RGIKSAEKFG
LKAPVAEWRA LREKIHADVC ANGFDVEQNA FVEHYGAKVL DASVLLIPAV GFLPPRDPRV
LGTLEAIERN LMSDGYVLRH DPRENQYPTE TEEGAFLACS LWLADAYVLA GEIDRAKELF
DRVAGIANDL GLLAEEYDTA QRRQTGNFPQ ALTHIALINT ANNLSAAKAA TQKPAMQRSK
QS
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