Gene Rpal_4113 details

Gene Information

• Locus tag: Rpal_4113
• ID: 6411797
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 4409667
• End bp: 4410305
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 642713995
• Product: Collagen triple helix repeat
• Protein accession: YP_001993084
• Protein GI: 192292479

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.366844
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCTGAAG CTGAATCCAC CCGCCGCGGA CGTCCGGGGC CGCAGGGCCC GCGCGGACGT 
CCCGGAGAAC CGGGCCGTCC GGGACCGCAA GGACATCCGG GCCGTCCCGG CCCCGAGGGC 
CCCCGAGGCA AGCAAGGTCC GGTCGGCAAG CCCGGCCCGC AGGGCAAGGC CGGTCCGCAA 
GGCAAACCCG GCATCGCCGG CAAGCCGGGC CCCGATGGCA AGCCCGGTCC GATCGGCCCG 
CAAGGCAAGG CCGGCCCGCA AGGTCCCCGC GGTGAACAAG GCCTGCGCGG CGAGCAAGGT 
CCTCGCGGTG AGCAAGGCCC GCAGGGGCCG CGTGGCGAAC AGGGCCCCCG GGGCGAGCCC 
GGCCCCGCCG GGGCGCTCCC CTCGATCGAG CAGGTGATGC CCTGGCTGCA CCTGATCTTC 
GACGCCTACG AAGATTACAA AGCGCAGCGC GCCCGCGAAG CCCGCGAGCT CGAAGAGCGT 
CTCGCCGCCG AAGCTCTCGA ACAGGCGGCG CGCGAAGCCG CCGAGCGCGA AGTCGCCGCC 
GCTATCGAAG CCGCAAATGC CGAGGCCGAG ATCATGCTCG ACGATGAGAC GCATGCCGAG 
GGCGGCAAGA AAAAGAAGAA GCGCAAGCAC AAGGACTGA 

 

Protein sequence

MAEAESTRRG RPGPQGPRGR PGEPGRPGPQ GHPGRPGPEG PRGKQGPVGK PGPQGKAGPQ 
GKPGIAGKPG PDGKPGPIGP QGKAGPQGPR GEQGLRGEQG PRGEQGPQGP RGEQGPRGEP 
GPAGALPSIE QVMPWLHLIF DAYEDYKAQR AREARELEER LAAEALEQAA REAAEREVAA 
AIEAANAEAE IMLDDETHAE GGKKKKKRKH KD