Gene Rpal_4095 details

Gene Information

• Locus tag: Rpal_4095
• ID: 6411779
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 4393516
• End bp: 4394124
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 642713977
• Product: Thiamine-phosphate diphosphorylase
• Protein accession: YP_001993066
• Protein GI: 192292461
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0352] Thiamine monophosphate synthase
• TIGRFAM ID: [TIGR00693] thiamine-phosphate pyrophosphorylase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.000665873
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGTATC CTGACCGTTT CTATCCCGTC GTCGACAGCA TCGCCTGGGT GAAGCGGCTC 
GCCGCGCTCG GCGTCGGCAC CGTGCAGCTC CGCGCCAAGG ACCTCGACGA CGGCGCCGCG 
CTGCAGCTCG TCACCGACGC GCTCGCGGCG GTGAAGGACA CGCCCACGAA GCTGATCATC 
AACGACTACT GGCGCGCCGC GATCGTCGCC GGCGCGCAGC ATCTGCATCT CGGCCAGGAG 
GACCTCGCTG AGGCCGACCT TTACGAGATC AAGAATGCCG GGCTGACGCT CGGCCTCTCC 
ACCCACGACG ACGCCGAACT CGAAACCGCG CTGGCCGCCG AGCCGGACTA CATCGCGCTC 
GGCCCGATCT TCCCGACCAC GCTGAAATCG ATGCGGTTTG CCCCCCAGGG CATTCCGAAG 
ATCACCGAAT GGAAGAAGCG CGTCGGCAAC ATGCCGCTGG TCGCGATCGG CGGCATCAAG 
CTGGAGCAGG CCGAAGAGAT CTTCGCCGCC GGCGCCGACT CGATCGCGGT GGTCAGCGAC 
GTGACGCAGA ACCCCGATCC AGACGCCCGC GTCCGCGCCT GGCTCGATTT CGTCGCCGAG 
AAGGCGTGA 

 

Protein sequence

MPYPDRFYPV VDSIAWVKRL AALGVGTVQL RAKDLDDGAA LQLVTDALAA VKDTPTKLII 
NDYWRAAIVA GAQHLHLGQE DLAEADLYEI KNAGLTLGLS THDDAELETA LAAEPDYIAL 
GPIFPTTLKS MRFAPQGIPK ITEWKKRVGN MPLVAIGGIK LEQAEEIFAA GADSIAVVSD 
VTQNPDPDAR VRAWLDFVAE KA