Gene Rpal_4068 details

Gene Information

• Locus tag: Rpal_4068
• ID: 6411752
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 4369742
• End bp: 4371643
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 642713950
• Product: Radical SAM domain protein
• Protein accession: YP_001993039
• Protein GI: 192292434
• COG category: [C] Energy production and conversion
• COG ID: [COG1032] Fe-S oxidoreductase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.0722964
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCAAGG CCGCTGCGAC CATCAGTTCC GCGTCGGATG ATCGCGCCCG GATCCGCGCC 
GAGTTCGACC GCTTCGCGGC CGCTCGCTCG CTGCAACGGC CGAGCGACTT GATCCTGATC 
CAGCCGGCGC TGGTGCCGCA GAGCTATTTC GACGTCACCA CCGCGCGCAG CGGCGGCTAC 
TACAACTTTC CGCCGGTGGG CCTGCTGTAT CTCGCCGCGG CTGCCCGCGC CGCCGATCCC 
GCGCTCGGCA TCCACCTGAT CGATATCAAT CATCAATTGC TCAAGGCCGC GCATGGCGAG 
GCCTTCGACT ACGGCCTTTG GCGCGATCTG GTGCGCGATG CGATCAAGGC CTGCGCCCAT 
CCGCATGTCG GCGTGTCGTA CATGTTCGGC ACCACCAAGC CGTGCTTCAC CGAAGTGATC 
GATCTGATCC GCAGCGAATT CCCCCAGGTG CCGATCCTGT GCGGCGGCGT GCAGGCGACG 
TTCGACTATC GGGAGATCCT GGCGAGCGGG CTGTGCGACA TCGTCGCCCG CCACGAAGGC 
GAACAGCAAC TGATCGGCTA TCTCGGCGCG CTGGCCGGCA ATCCGGATGC CGTGCCGGTC 
GGCATGGCAT TCACCGAGGC CGGCGCCATC GTCGAGCTCG GCACACCACC GCCGGACAAT 
CCGGTGAACT GGGACGTCAC GCCGTTCTAC GACGCGATCC GGATCGAGGA GTATCACCGC 
TATGGCGGGC TCGGCGCATT CTCGCGCTAT GTCGGCGCCG ACAAGCCTTT CGCCACGGTG 
CTGGCCGCGC GCGGCTGCCG CGCCCGCTGC ACCTTCTGCA CGGTGCGCAA CTTCAACGGC 
TTCGGCCTGC GGCAGCGCAC GGTGCAGGAC GTCATCGACG AGGTGAAGCA CCTCGTGACC 
GATCACGGCA TCCGCTCGAT CGACTGGCTC GACGACGATC TGCTGTGGGA CCGGGACCGC 
GCGCTGGCGC TGTTCAGGGG CCTCGCCGAG CAGGTGCCAG GGCTGGAATG GACCGCCAGT 
AACGGCCTGA TCGCAGTGGC GATCGACGAC GAGATGATGC AGGCAATGGT GGCGTCCGGT 
CTGCGCGCCT TCAAGATCGG CGTCGAGTCC GGCAACGACG CGATGCTGAA GACGATCAAG 
AAGCCGACCA CCAAGCCGAA GCTGCGCGCC CGCGCCGGGC TGTTCGCCAA ATATCCGGAC 
GTGTTCGTCT CGACCAATTT CATCATCGGT TTCCCCGACG AAACCTTCGG ACAGATGATG 
GACAGTTACG ATCTGGCGGT CGAGCTCGCC AGCGACTGGG CCAGCTTCTA CATCTGCCAG 
CCGCTGAAGG GCACTGAGAT GTTCTCGGCG TTCCAGTCGC TCGGCGATGC CCGCACCAAG 
GAAGAGCGCT ACGACAAGAC CATCAATCCG GGGCGCTCCG CCGAGCGCGG CGAATTCGGC 
TACCGCTTCG CGCCCGACCG CGTGCTGCGC ACCGGCTGGG AGGTGTTCGA GATCGACCGC 
AACGGCGTGC CGGATCTCGA ACAGCAGAAG GAGATCTGGT TCAGTTTCAA CCTGGTCGCC 
AACTTCCTCG ACAATCCGAA CTTCCGCCCC GGCGGCAACG CCGCCAAGCT GGCGCGCTGG 
ATCGAGGCGA TCCACGACGG CTATCCCTAC GACGCCTCGA TGGCCGCGGC GCTGGCGCAC 
GCTTATCACC TGCTCGGCAA CGCGAACCGC CACGCCCATC ACCGCGCCGA CTTCCTGCGG 
CTCACCGCAA CCTCCGCCTA TTGGCAGAAC CGCGTCGCGC AGTTCCCCGA ACTGCTGGTG 
CTGGCGCATC TCGAGCAGCC GCCGGACTGG TTCGCCGGCC CGATGCCGCG CGGTTTGACC 
CGGCCGTTGC CGCAGCCGCA GCGCCAACAG GTGCATGCAT GA 

 

Protein sequence

MTKAAATISS ASDDRARIRA EFDRFAAARS LQRPSDLILI QPALVPQSYF DVTTARSGGY 
YNFPPVGLLY LAAAARAADP ALGIHLIDIN HQLLKAAHGE AFDYGLWRDL VRDAIKACAH 
PHVGVSYMFG TTKPCFTEVI DLIRSEFPQV PILCGGVQAT FDYREILASG LCDIVARHEG 
EQQLIGYLGA LAGNPDAVPV GMAFTEAGAI VELGTPPPDN PVNWDVTPFY DAIRIEEYHR 
YGGLGAFSRY VGADKPFATV LAARGCRARC TFCTVRNFNG FGLRQRTVQD VIDEVKHLVT 
DHGIRSIDWL DDDLLWDRDR ALALFRGLAE QVPGLEWTAS NGLIAVAIDD EMMQAMVASG 
LRAFKIGVES GNDAMLKTIK KPTTKPKLRA RAGLFAKYPD VFVSTNFIIG FPDETFGQMM 
DSYDLAVELA SDWASFYICQ PLKGTEMFSA FQSLGDARTK EERYDKTINP GRSAERGEFG 
YRFAPDRVLR TGWEVFEIDR NGVPDLEQQK EIWFSFNLVA NFLDNPNFRP GGNAAKLARW 
IEAIHDGYPY DASMAAALAH AYHLLGNANR HAHHRADFLR LTATSAYWQN RVAQFPELLV 
LAHLEQPPDW FAGPMPRGLT RPLPQPQRQQ VHA