Gene Rpal_4057 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4057 
Symbol 
ID6411740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp4355550 
End bp4356416 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content68% 
IMG OID642713939 
ProductN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 
Protein accessionYP_001993028 
Protein GI192292423 
COG category[V] Defense mechanisms 
COG ID[COG3023] Negative regulator of beta-lactamase expression 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.100978 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGTCAG GTTCGTTAGC GTCCGCTGGT CTGGAGTCGA AACGTCGACG CGCCCTCCCT 
TTGCCCAAGG GCATGGTGTC TATGCAGACC TTCACGCCCG ACTCGTCGAT GGTGTCCGAC
GTGCTTCCAT CGCCGAACTA TGGCGAGCGG AATAAAGCGC GCCGTCCGGA CATGATCGTG
CTGCACTACA CCGGCATGCC CGACGTCGAA GGCGCGCTGA CCCGGCTGTG CAAGGCCGGC
ACCGAAGTCT CGGCGCACTA CGTCGTGCTC GAAGACGGCC GGATCCTGCA ATGCGTCCCG
GAATCCAAGC GCGCCTGGCA CGCCGGCGTC GCGTCCTGGG CCGGCGAGGA AGACATCAAT
TCCTGCTCGA TCGGCATCGA GATCATCAAT CGCGGCCACG ATTGGGGCTA TCCGGATTAT
CCGCTGCGCC AGATCGCGGC GGTGATCGCG CTGTGCCGCG GCATCATCCT GCGCCGCGAT
GTGCCACCGC ACCGTGTCGT CGGCCATTCC GACGTGGCAC CGGCGCGCAA GAAAGACCCG
GGCGAGAAAT TCCCGTGGCG ATCGCTCGCC GCCTCCGGCG TGGGCCTGTG GGTCGAGCCG
GCGCGGATCG TGCCGGGGCC GGCGCTGAAG CAAGGCACCG AGGGCGACGA GGTGCGGCTG
ATGCAGCAGG CTCTGGCCGA CTACGGCTAC CGCGTCCCTG TCAACGGCAG CTACGACCAC
GCCACCACCG ACGTCGTCAC CGCGTTCCAG CGTCACTTCC GCCCGGAGAA AGTCGACGGC
ATCGCCGACG CCTCGACGCT GGCGACGCTG CACGCGCTGC TCGCGCGCCT CCCGGTCGAA
GCCCGCGCCA TCGCTGCGCT CGGCTGA
 
Protein sequence
MLSGSLASAG LESKRRRALP LPKGMVSMQT FTPDSSMVSD VLPSPNYGER NKARRPDMIV 
LHYTGMPDVE GALTRLCKAG TEVSAHYVVL EDGRILQCVP ESKRAWHAGV ASWAGEEDIN
SCSIGIEIIN RGHDWGYPDY PLRQIAAVIA LCRGIILRRD VPPHRVVGHS DVAPARKKDP
GEKFPWRSLA ASGVGLWVEP ARIVPGPALK QGTEGDEVRL MQQALADYGY RVPVNGSYDH
ATTDVVTAFQ RHFRPEKVDG IADASTLATL HALLARLPVE ARAIAALG