| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4052 |
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| Symbol | |
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| ID | 6411735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4348916 |
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| End bp | 4350355 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642713934 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase |
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| Protein accession | YP_001993023 |
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| Protein GI | 192292418 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.11633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAC AACCGCTTTG GACCTCCGAC GCAATGGCGG AGGCGATGGC TGCCACGCGC
AGCGGCACGC TGCCGCGCGA TGTATATGGG ATTTCGATCG ACAGCCGCAC GTTGGCACCG
GGCGATGCTT ACTTCGCCAT CAAGGGCGAT GTTCATGACG GCCATGACTT CGTCGCCGCG
GCGCTGAACG CCGGCGCCGC GCTGGCGGTG GTGGAGAAGG CGCAGCGCGC CAAGTTCGCT
CCCGATGCGC CGCTGCTCGT CGTCGATGAC GTGCTCGAAG GACTACGCCA GCTCGGCATC
GCGGCGCGCT CGCGGCTGCC CGCCAAAGTG ATCGCGGTGA CCGGCTCGGT CGGCAAGACC
TCGACCAAGG AAGGTCTGCG CGGCGTGCTC GGCGCGCAGG GCGCGACCCA CGCCTCGGTG
GCGTCGTTCA ACAATCACTG GGGCGTGCCG CTGTCGCTGG CGCGCTGTCC GGTGGACTCG
CGGTTTGCGG TGTTCGAGAT CGGCATGAAC CACGCCGGCG AGATCGAGCC GCTGGTGAAG
ATGGTGCGGC CGCACATTGC GATCATCACC ACGGTCGAAG CCGTGCATCT CGAGTTCTTC
TCCGGCATCG AGGGCATCGC CGATGCCAAG TCGGAGATCT TCACCGGGCT CGAGCCGGGC
GGCATCGCCG TGCTGAACCG TGATACGCCG ATGTTCGACC GGCTGTGCAG CAATGCGTTG
CGCGCCAATG TCGGTCGCAT CGTCACCTTC GGTGCCGATC CCGCCGCCGA TGCGCGGCTG
CTCGATGTCG CGCTGCATGC CGACTGCTCG GCCGTGCATG CCAGCATTCT CGGCCACGAC
GTCACCTACA AGCTCGGCAT GCCGGGCCGG CACATGGCGC TGAATTCGCT GGCGGTGCTG
GCCGCTGCGG AGCTTGCCGG CGCCGACCTC GCGCTCGCCG CGCTGGCGCT GTCGCAGGTC
GCACCCGCCG CCGGCCGCGG CGTCCGCAAG CCGTTGCCTG TCGGCTCCGG CGAGGCGACG
CTGATCGACG AGAGCTACAA CGCCAATCCG GCCTCGATGG CCGCGGCGCT TGGCGTGCTC
GGCCGCGCCG AAATCAGCGG GCAGGGGCGG CGGATCGCCG TGCTGGGCGA TATGCTCGAA
CTCGGCCCGC GCGGCCCGGA GCTGCACCGG GGCCTGGAAG AGGCGGTGCG GGCCAATGGC
ATCGACCTGG TGTTCTGCTG CGGCCCGTTG ATGCGCAATT TGTGGGACGC CCTTTCCTCC
GGCAAACGAG GGGGCTATGC AGGCGACGCG GCCGCGCTCG AATCCCAAGT CGTCGCCGCA
ATCCGAGCCG GCGACGTCGT GATGGTGAAG GGGTCGCTCG GTTCGCGCAT GAAAACCATT
GTCACCGCGC TCGAGAAGCG CTTCCCCGGC ACGACCGCAC GCGACGACGC TGCGGTGTAA
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| Protein sequence | MSKQPLWTSD AMAEAMAATR SGTLPRDVYG ISIDSRTLAP GDAYFAIKGD VHDGHDFVAA
ALNAGAALAV VEKAQRAKFA PDAPLLVVDD VLEGLRQLGI AARSRLPAKV IAVTGSVGKT
STKEGLRGVL GAQGATHASV ASFNNHWGVP LSLARCPVDS RFAVFEIGMN HAGEIEPLVK
MVRPHIAIIT TVEAVHLEFF SGIEGIADAK SEIFTGLEPG GIAVLNRDTP MFDRLCSNAL
RANVGRIVTF GADPAADARL LDVALHADCS AVHASILGHD VTYKLGMPGR HMALNSLAVL
AAAELAGADL ALAALALSQV APAAGRGVRK PLPVGSGEAT LIDESYNANP ASMAAALGVL
GRAEISGQGR RIAVLGDMLE LGPRGPELHR GLEEAVRANG IDLVFCCGPL MRNLWDALSS
GKRGGYAGDA AALESQVVAA IRAGDVVMVK GSLGSRMKTI VTALEKRFPG TTARDDAAV
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