Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4050 |
Symbol | murD |
ID | 6411733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4346223 |
End bp | 4347632 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642713932 |
Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
Protein accession | YP_001993021 |
Protein GI | 192292416 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATCCCCG GCACCTCTTT CGCCGGCCAG TCGGTCGCGG TGTTCGGGCT CGGCGGGTCG GGGTTGGCGA GCTGCCATGC GCTGAAGGCC GGCGGTGCCG AAGTGATCGC TTGCGACGAT AATCTCGACC GCATGGTCGA GGCGGCGCAG GCCGGCTTCA TCACCGCGGA TCTGCGCAAT CTGCCGTGGA CTAATTTTGC AGCGCTGGTG CTGACGCCCG GCGTGCCGCT GACGCATCCG GCGCCGCATT GGACGGTGCT GAAGGCGCAG GAGGCCGGCG TCGAAGTGAT CGGCGACGTC GAATTGTTCT GCCGCGAGCG CAAGGCGCAC GCGCCGCGCG CCCCGTTCGT CGCTATCACC GGCACCAACG GCAAGTCGAC CACGACGGCG CTGATCGCGC ATCTGCTGCG CGAGGCCGGT TGGGATACCC AGCTCGGCGG CAATATCGGC ACCGCGATCC TGTCGCTGGA GCCGCCCAAG GATGGCCGCG TCCACGTCAT CGAGATGTCG TCCTATCAGA TCGACCTGAC GCCGTCGCTC GATCCGACCG TCGGCATCCT GCTCAACGTC ACCGAGGATC ACATCGACCG TCACGGCACG ATCGAGCACT ACGCTGCGGT GAAGGAGCGG CTGGTGGCTG GCGTGCAGGA CGGCGGCACG TCGATCATCG GTGTCGACGA TGAGTTCGGC CGTGCCGCGG CGGACCGGAT CGAGCGTGCC GGAAAGCGCG TGGTGCGGAT GTCGGTGCAG GGGCCGGTTC AGTCCGGCAT CACCGCCGAT CTTGAAACCA TTCGCCGCAT CGACGGCGGC AAATCCACCG AAGTCGCCAA GCTCGGCGGC ATCGGCTCGC TGCGCGGGCT GCACAACGCG CAGAATGCCG CAGCCGCAGC GGCTGCGGTG CTGGCGCTCG GCGTTTCGCC AGAGGTGCTG CAGCAGGGGC TACGCAGCTT CCCCGGCCTC GCGCACCGGA TGGAGCAGGT CGGCCGCCAA GTGGGCGAGA AGGGGACGAC GCTGTTCGTC AACGACTCCA AGGCCACCAA TGCCGATGCG GCCGCCAAGG CGCTGGCGTC GTTCGGCGAG ATCTTCTGGA TCGCCGGCGG CAAGCCGAAG ACCGGCGGCA TCGAGAGCCT GGCCGAGTAC TTCCCAAGCA TCCGCAAGGC TTACCTGATC GGCCAGGCCG CGCAGGAATT CGCCGCCACG CTGGAGGGCA GGGTGCCGTA CGAGATCAGC GAGACGCTGG AAGCCGCCGT GCCGGCTGCC GCGCGCGATG CCGCGGCGTC GGGGCTGGCT GAACCGGTGG TGCTGCTGTC GCCGGCCTGC GCCTCGTTCG ACCAGTTCCG CAATTTCGAG CTCCGCGGCA CCAGGTTCCG CGAGCTGGTG ACGGCGCTCG ACGGCGTGAC GCCGGTGTGA
|
Protein sequence | MIPGTSFAGQ SVAVFGLGGS GLASCHALKA GGAEVIACDD NLDRMVEAAQ AGFITADLRN LPWTNFAALV LTPGVPLTHP APHWTVLKAQ EAGVEVIGDV ELFCRERKAH APRAPFVAIT GTNGKSTTTA LIAHLLREAG WDTQLGGNIG TAILSLEPPK DGRVHVIEMS SYQIDLTPSL DPTVGILLNV TEDHIDRHGT IEHYAAVKER LVAGVQDGGT SIIGVDDEFG RAAADRIERA GKRVVRMSVQ GPVQSGITAD LETIRRIDGG KSTEVAKLGG IGSLRGLHNA QNAAAAAAAV LALGVSPEVL QQGLRSFPGL AHRMEQVGRQ VGEKGTTLFV NDSKATNADA AAKALASFGE IFWIAGGKPK TGGIESLAEY FPSIRKAYLI GQAAQEFAAT LEGRVPYEIS ETLEAAVPAA ARDAAASGLA EPVVLLSPAC ASFDQFRNFE LRGTRFRELV TALDGVTPV
|
| |