| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4029 |
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| Symbol | |
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| ID | 6411712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4319005 |
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| End bp | 4320615 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642713911 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_001993000 |
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| Protein GI | 192292395 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.150408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGATC CCGACGTCCT GATCATCGGT GCCGGCCACA ACGGCCTCAC CTGCGCGACC
TATCTGGCGC GCGCGGGACT GAAGGTGAAG GTGGTGGAGC GCCGCAGCGT GGTCGGCGGC
GCCGCGGTGA CGCAGGAGTT TCATCCCGGC TTCCGCAACT CGGTCGCGGC CTACACGGTC
AGCCTGCTCA ATCCGAAGGT GATCGCCGAC CTCAAGCTGC ACGAGCACGG GCTTAGAATC
GTCGAGCGCA AGGCGCAGAA CTTCCTGCCC GCACCTGACG GCCAATATCT GCTCACCGGC
AACAACTTCA CCGCCGCCTC GCTGGCGCGG CTCAGCGCAC ATGATGCCGC GGCGTTCGGC
GGGTTCGCCG CCGAGCTCGA AACCATCGCC GACGTGCTGC GGCACTTCGT GCTGCGCGCC
CCGCCCAATC TGGTAGCGCA GTTCGGCCTG CCCGCAATCC GGGAAAGCCT GAATGCGCTT
GGAACCGCCA ACCGGCTGCG GGCTCTCACC ATGGAGCAAC AGCGGCTGTT GCTCGACCTG
TTCACCTGCT CGGCCGGCGA GATGCTCGAC GCCCGGTTCG AGCACGATCT GGTCAAGGCG
CTATTCGGCT TCGACGCCAT CGTCGGCAAC TATGCCAGCC CCTACGCCGC CGGCTCGGCC
TATGTGATGC TGCATCACGC CTTCGGCGAG GTGAACGGCA AGAAGGGCGT CTGGGGCCAC
GCGGTCGGCG GCATGGGCGC GATCACCCAA GCGATGGCGG CCGCCGCCCG TGCCGCCGGC
GCCGAGATCG AAACCTCCGC CGGTGTGAGC GAGGTTCTGG TGGAGAAGGA TCGCGTGGTC
GGCGTCAGCT TCGACGACGG CCGCACGCTG CGCGCCCGCT TCATTGCGTC CAACGTCAAC
CCGAAGCTGC TGTACACCCG CCTGCTCCCG GCGGGGGCCC TGCCCGACGA TATCCGGCGG
CGGATGCAGC ATTGGAAGAC CGGCTCCGGC ACCTTCCGGA TGAACGTCGC GCTGGCGAAG
CTGCCGTCGT TCACCGCGCT GCCCGGCAAT GGCGACCACC TCACCGCCGG CATCATCATC
GCGCCGAGCC TGCCCTACAT GGACCGTGCC TATCAGGACG CTCGCGCCCA GGGCTGGAGC
CGCGAGCCGG TAGTCGAGAT GCTGATCCCG TCGACGCTCG ACGACAGCCT GGCGCCGAAC
GGCCAGCACG TCGCCAGCCT GTTCTGCCAG CACGTCGCCC CCGAACTGCC GGATGGCGCC
TCCTGGGACG ACCATCGCGA GGAGGTCGCC GACCTGATGA TCGCGACCGT CGACCGCTAT
GCGCCCGGCT TTGCCACCAG CGTGCTCGGC CGCCAGATCC TGTCGCCGCT CGATCTCGAG
CGCGAATTCG GGCTCGTCGG CGGCGACATC TTCCACGGTG CGCTCAGCCT GAACCAGCTG
TTCTCCGCGC GCCCGCTGCT CGGCCATGCC GATTATCGCG GCCCGCTCAA GGGCCTCTAC
CACTGCGGCA GCGGCGCCCA CCCGGGCGGC GGCGTCACCG GCGCCCCCGG CCACAACGCC
GCGGCCGCGA TCCTCAACGA CCACCGCAGC CTGTTCGCAA GCCGTGGATA A
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| Protein sequence | MSDPDVLIIG AGHNGLTCAT YLARAGLKVK VVERRSVVGG AAVTQEFHPG FRNSVAAYTV
SLLNPKVIAD LKLHEHGLRI VERKAQNFLP APDGQYLLTG NNFTAASLAR LSAHDAAAFG
GFAAELETIA DVLRHFVLRA PPNLVAQFGL PAIRESLNAL GTANRLRALT MEQQRLLLDL
FTCSAGEMLD ARFEHDLVKA LFGFDAIVGN YASPYAAGSA YVMLHHAFGE VNGKKGVWGH
AVGGMGAITQ AMAAAARAAG AEIETSAGVS EVLVEKDRVV GVSFDDGRTL RARFIASNVN
PKLLYTRLLP AGALPDDIRR RMQHWKTGSG TFRMNVALAK LPSFTALPGN GDHLTAGIII
APSLPYMDRA YQDARAQGWS REPVVEMLIP STLDDSLAPN GQHVASLFCQ HVAPELPDGA
SWDDHREEVA DLMIATVDRY APGFATSVLG RQILSPLDLE REFGLVGGDI FHGALSLNQL
FSARPLLGHA DYRGPLKGLY HCGSGAHPGG GVTGAPGHNA AAAILNDHRS LFASRG
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