Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4000 |
Symbol | |
ID | 6411682 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4286872 |
End bp | 4288083 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642713882 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_001992971 |
Protein GI | 192292366 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATTGT TTCGGCATAC AACGATCGTC GCCGCGGCTG CGCTGCTTGC AGTGCTCAGC GCCGGCCCAG CGCTCGCCGG CGGCAGCTAT GACCCCGGCG CCAGCGACAG CCTGATCAAG CTCGGCCAGA CCATGCCGTA TTCGGGACCG GCGTCGGCCT ATTCGACGAT TGGGCGCGCC GAGGCCGCTT ACTTCAAGAT GCTGAACGAC AAGGGCGGCA TCAACGGCCG CAAGGTCGAG TTGCTGAGCC TCGACGATGC CTACTCGCCG TCGAAGACGG TGGAGCAGGT CCGCCGGCTG GTCGAAAGCG ACGAAGTGCT GGCGATGTTC TCGATCCTCG GCACCGGGCC GAACATCGCG GTGCAGAAGT ATCTCAATAT CAAGAAGGTC CCGCAGCTAT TGCCGTTCAG CGGCGCCACG CGCTGGAACG ACGCCAAGCA CTTCCCGTGG ACCACCGGCT CGCAGCCGAC CTACAAGACC GAGGGCAGGA TCTACGCGAA GTGGATTCTC GCCAACAAGC CGAATGCTAA AATTGCGGTG ATCACGCCGG CCGAAGAAGC CGGCCGCGAT TATCTCGCCG GCTTCAAGGA AGGACTCGGC GACCATGTGA ACCAGATCGT GTCTGAGGCG GTGTATGAAA CCACCGATCC GACCGTCGAC TCCCAGATCG TCAAGTTCAA GGCCGCCGGC GCCGACGTGC TGTTCAACGA ATGCACGCCG AAATTCGCCG CGCAGGTGAT CAAGAAGGCC GCCGAGCTCG GCTGGAAGCC GCAGATCATT CTGCCCGCGG TTTCGAATTC GGTCGGCTCG GTACTCAAGC CGGCGGGGCT GGAGAATGCG GTCGGCATCG TCACCGGCGC TTACGTGAAG GATCCGGGCG ATCCGCGCTG GGCCAATGAT CCCGGCATGC AGCAATGGCA CGCCTGGATG AAGACCTACA ATGCGGGTGC CGATCCGGCC GATATCTTCA ACGTCTACGG TTACACGATC ACGCAGATCA TGGAGCTGGT GCTGCGTCGC GCCGGCGACG ATCTCACCAG GGCAAATCTG ATGAAGCAGA TCGAGTCGCT CGATGGCGTC GAGCTGCCGA TGCTGCTGCC TGGCATCAAG CTGCAGATGT CGCCCGACCA GCGCACGCCG ATCCGGCAGT TGCAGATGGC GCGCTTCAAC GGCACCTCCT GGGAGCTGTT CGGCGACGTA CTGAGCGAGT AG
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Protein sequence | MQLFRHTTIV AAAALLAVLS AGPALAGGSY DPGASDSLIK LGQTMPYSGP ASAYSTIGRA EAAYFKMLND KGGINGRKVE LLSLDDAYSP SKTVEQVRRL VESDEVLAMF SILGTGPNIA VQKYLNIKKV PQLLPFSGAT RWNDAKHFPW TTGSQPTYKT EGRIYAKWIL ANKPNAKIAV ITPAEEAGRD YLAGFKEGLG DHVNQIVSEA VYETTDPTVD SQIVKFKAAG ADVLFNECTP KFAAQVIKKA AELGWKPQII LPAVSNSVGS VLKPAGLENA VGIVTGAYVK DPGDPRWAND PGMQQWHAWM KTYNAGADPA DIFNVYGYTI TQIMELVLRR AGDDLTRANL MKQIESLDGV ELPMLLPGIK LQMSPDQRTP IRQLQMARFN GTSWELFGDV LSE
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