| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3980 |
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| Symbol | |
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| ID | 6411662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4271235 |
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| End bp | 4272383 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642713862 |
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| Product | phage major capsid protein, HK97 family |
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| Protein accession | YP_001992951 |
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| Protein GI | 192292346 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
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| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGCCCC ACTACGAACT GGAACTGAAG GAAGCCGACA CCGACCCGGC CGAACTGGTC
ACCAAAGCGC TCGCCGACTT CAAGGATGCC GTCGACGGCC GCTTGACCGC GATCGAAACC
AAGGCCGCGA ACGACAACAA GCTGGCCGAT CGGCTTGACC GTATCGAAGC CAAAATGAAC
CGGCCGGGCA TCGGTGCCGC GAACGACAAC GACGACCTCG AGCGTAAGGC GTTCATTTCG
TTCGCGCGTC GTGGTGTCGA ACGCATGGGC GCCGACGAAC AGAAGGCGTT GACCGTCTCG
ACCGATGCGT CCGGCGGCTA CCTCGCCCCG GAGCAGTTCG GCAACGAGCT GATCAAGTTG
TTGCGGCAAT ATTCGCCTGT CCGACAGTAT GCCAACGTGG TCAGCATCGG CGCTGCCGAG
ATCAAGTATC CCCGCCGCAC CGGCAGCACG GTGGCATCCT GGGTGGATGA AACCGAGGAT
CGCAGCGAAA GCGAGCCGAG CTTCGAACAG ATCACGATCG CGCCCTTTGA GCTGGCGACC
CATTCGGACG TGTCGACGCA GCTTCTGGAA GACAACGCCT ACAATCTCGA AGGCGAGCTC
GCAGCGGACT TCGCCGAGAC TTTCGGCATC AAGGAAGCCG CGGCGTTCGT GAAGGGCTCC
GGCGTCAAGC AGCCGACCGG CATCATGACC GCGGCGGGCA TCACCGAAGT CAAGACCGGC
GCCGCCGCGA CGTTCCCGAC CTCCAACCCG GCCGACGTGC TGATCGGCAT GTATCACGCG
CTGCCCGGCG TTCATGCCCA GAATGGCGTG TGGATGATGA ACCGCACCAC GCTCGGCACC
ATCCGCCAGT GGAAGGACGG CAACGGCCGC TATCTGGTCC TCGATCCGAT CTCGGCTGGC
GCACCGGTCA CCCTGCTTGG TCGCCCGATC GTCGAAGCGA TCGACATGGA CGACATCGGC
GCCAACAAAT ATCCGGTGCT GTTCGGCGAT CTGAAGGGCT ATCGCATCGT CGATCGCGTC
GGCCTTTCGG TGCTTCGCGA CCCGTATTCG CTCGCGACCA AGGGTCAGGT TCGGTTCCAC
GCCCGGACGC GGGTCGGCGC CGGCCTCACT CACCCCGACC GCTTCATCAA GCTCAAGGTG
GCGGCGTAA
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| Protein sequence | MKPHYELELK EADTDPAELV TKALADFKDA VDGRLTAIET KAANDNKLAD RLDRIEAKMN
RPGIGAANDN DDLERKAFIS FARRGVERMG ADEQKALTVS TDASGGYLAP EQFGNELIKL
LRQYSPVRQY ANVVSIGAAE IKYPRRTGST VASWVDETED RSESEPSFEQ ITIAPFELAT
HSDVSTQLLE DNAYNLEGEL AADFAETFGI KEAAAFVKGS GVKQPTGIMT AAGITEVKTG
AAATFPTSNP ADVLIGMYHA LPGVHAQNGV WMMNRTTLGT IRQWKDGNGR YLVLDPISAG
APVTLLGRPI VEAIDMDDIG ANKYPVLFGD LKGYRIVDRV GLSVLRDPYS LATKGQVRFH
ARTRVGAGLT HPDRFIKLKV AA
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