| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3969 |
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| Symbol | |
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| ID | 6411650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4259425 |
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| End bp | 4261806 |
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| Gene Length | 2382 bp |
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| Protein Length | 793 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642713850 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001992940 |
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| Protein GI | 192292335 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGGGG CAAAGGCACC GAGGTCGTTG CGGGCGGAAG CAACGCTTCG GACTTTCAGT
GAATTCGACG GCCATCACGG CCGCAAGGTT TCGGCGGTGG CCGGCATGAT CGCAGTGGCG
TCGATCGGCG GCGCCGAAGC GCAGCAGTCG AGTTTGCCGG CAGTGACCGT CGATGCCCCG
GTGGCACGGC CGAAGCCGGC TGCGGTGCGC GCAACGCCTG ATCAGGTGCG GGCTCGCACC
GCGCTGCGCC GGGCGGCGCG CCGCGCGCAG CCGACCCAGG TGCAGCCGGT GCCGTTCCCC
AATGCCGGCA CGCTGTCGGC GGATCGCAAT CCCTATGCGG ATGCGGCCGC GCCCTACAAG
GTCGACCGGC TGTCGGGCAC CAAGTTCACC GAGCCGGTGC TGAACACCCC GCGCACCGTG
ACGGTGCTGA CCAAGGAACT GCTCGAAGAC AAGAACGCGA CCTCGCTGCG CGAAGTCGCG
CGCTCGACCG CCGGTGTCAC GCTCGGAACC GGGGAGGGCG GCAACGCGTT CGGCGACCGC
TTCTTCATCC GCGGTTTCGA CGCCCGCAAC GACGTGTTCA TCGACGGCAT CCGCGATCCG
GCGATCTCGA TCCGCGAGAA CTTCTTCACC GAGCAGGTCG AGATTCTGCG CGGTCCGGCC
TCGACCATGG CGGGCCGCGG TACTGCCGGC GGTGCCATCA ACATCGTCAC CAAGCAGGCG
ACCACCGAAG GCAATTTCAC CAAGGCCGAA ACCACGTTCG GCTCCGACGC CACCAAGCGG
GTCACCGTCG ACGTCAACCA GGTGCTGAGC CCGACCTTGG CGGTGCGTGT CGACGGCCTG
TACCAGGACG CCAGGGTCGC CGGCCGCAAC TACGTCACCG ACGATCGCTG GGGCACGCTC
GCTGCAGTGA AGTGGACGCC GACCGACGCC ATCAAGGTCA CCGCCAACTA CGTTCACACC
GATCTCGACG GCCTGCCGGA TTTCGGCGTG CCGTACAACA CCGCGCTGCG CCGGCCGTCG
ACCGACGTCA ACGTGCCGCG CGAAACCTAT TACGGTTTCG TCAATCGCGA CTTCCAGAAG
GCCAAGCAGG ATTTCGGCAC GGTCACCGGC GAGTTCGCGA TCACGCCGGA CCTGACGCTG
ACCAACCGCT CGCGCGCCGC GCATTCGGTG CTCAACTATA TCGGCACGCT GCCGAGCAAT
CCGACCGCCA CCACGGTCTC GCTCGCGTCG CAGAGCCGCT ATCAGACCAC CGACGTACTC
GCCAACCAGA CCGACCTGAC CTACAAGTTC GACGTCGGCG GGGTGAAGCA CACCATGGTC
GGCGGTGCGG AAATCTCGCG CGAAAGCGTG ATGCGCGACA CCTATGCGGG CCTCACCTCG
GAGCTCGCCG GCTTCCAGAG CGGCGGCCGC ATCACCGTGC CGCTGCTGGC GCCGCCGAAC
CTGTTCGAGT TCGCCACCCA GCCGCAGCGT GCCTACAACC CGACCTTCAT CAACGTCGAT
ACCAAGTCGG CCTATGTGAT CGAGACCGCC AACTGGAACG ACGTCGTCAT CCTCAACGGC
GGCCTGCGCT ACGACGACTA CAACATCACC GGACACACCG CGGCGACCTC CACCTCGGTG
CAGTCGGGGA TGTGGAACTA CAATCTCGGC GCGGTGGTGA AGCCGCTGCC GTACGCCAGC
CTGTACGCCG CCTACGCGAC CTCGACCAAC CCGGTCGGCG CCGAACTTGA TGCTTCGGGC
ACCGCTTACG GCGGCCTCGT GGTCAACAAC GCCACCTTCC AGGCGCTGCC GCCGGAAATG
AACAAGGCGG CCGAAGTCGG CACCAAATGG GAGCTGTTCG ATCGACGGCT GCTGCTGACC
GCGTCGCTGT TCGAAACCCA GAAGTCGAAC GCCCGCGAAA CCGTCGGCAA CAACATCCTG
TCGACCGGCG TCTATCGGGT CCGCGGCATC GATCTCGAAG CCGCCGGCAA GATCACCGAT
CGCTGGAGCG TGTTCGGCGG CCTGGTGCTG ATGGAAACCA AGGTGCTGCA GTCGATCGAT
CCGAATTCGG TCGGTGCGCA GCTCGCCAAT ATCGCGCACC AGTCGTTCAA CCTGCTGACC
AAGTACAAGT TCGACGACCA TTGGGAAGTC GGCGGGCAGG CGGTGTACGC CTCCAAGATC
TACGGCGGCA CCTTCGCGGC GATCAACGGC AACGTGCTGC CCGAGCACTG GCGGTTTGAC
AGTTTTGTCG AATTCAAAGT CGACAAACAC ATGACCGCCA AGTTGTCGGT CAACAACATC
TTCAACACCA CCTATTACGA CGCGTTCTAT CGTTCGAACT CGCCGTTCGT GTTCATCGCG
CCCGGCCGTT CGGTCTGGCT GACGCTACGC GGCGCGCTGT AA
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| Protein sequence | MNGAKAPRSL RAEATLRTFS EFDGHHGRKV SAVAGMIAVA SIGGAEAQQS SLPAVTVDAP
VARPKPAAVR ATPDQVRART ALRRAARRAQ PTQVQPVPFP NAGTLSADRN PYADAAAPYK
VDRLSGTKFT EPVLNTPRTV TVLTKELLED KNATSLREVA RSTAGVTLGT GEGGNAFGDR
FFIRGFDARN DVFIDGIRDP AISIRENFFT EQVEILRGPA STMAGRGTAG GAINIVTKQA
TTEGNFTKAE TTFGSDATKR VTVDVNQVLS PTLAVRVDGL YQDARVAGRN YVTDDRWGTL
AAVKWTPTDA IKVTANYVHT DLDGLPDFGV PYNTALRRPS TDVNVPRETY YGFVNRDFQK
AKQDFGTVTG EFAITPDLTL TNRSRAAHSV LNYIGTLPSN PTATTVSLAS QSRYQTTDVL
ANQTDLTYKF DVGGVKHTMV GGAEISRESV MRDTYAGLTS ELAGFQSGGR ITVPLLAPPN
LFEFATQPQR AYNPTFINVD TKSAYVIETA NWNDVVILNG GLRYDDYNIT GHTAATSTSV
QSGMWNYNLG AVVKPLPYAS LYAAYATSTN PVGAELDASG TAYGGLVVNN ATFQALPPEM
NKAAEVGTKW ELFDRRLLLT ASLFETQKSN ARETVGNNIL STGVYRVRGI DLEAAGKITD
RWSVFGGLVL METKVLQSID PNSVGAQLAN IAHQSFNLLT KYKFDDHWEV GGQAVYASKI
YGGTFAAING NVLPEHWRFD SFVEFKVDKH MTAKLSVNNI FNTTYYDAFY RSNSPFVFIA
PGRSVWLTLR GAL
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