| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3963 |
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| Symbol | |
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| ID | 6411644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4254558 |
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| End bp | 4255292 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642713844 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001992934 |
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| Protein GI | 192292329 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.944357 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGACC GGCTGACAGG CAAGCGCGCG TTCGTCACCG CGGCAGCGGC GGGGATCGGG
CGGGCATCGG CGATCGCGTT TGCGCGCGAG GGCGCCGAGG TATTCGCCAC CGATATCGAT
GAAGCCGGGC TTGCCTCGCT CGCCGAGCAC GGCATTGCGC GCACCGCCAA GCTCGACGTC
CGCGACACCG CCGCGGTCGA AGCGATCGCC CGCGAGGCCG GCACCGTCGA CATCCTGCTC
AATGCCGCGG GCTTCGTGCA TCATGGGACG GTGCTGGACT GCTCGGATAC GGATTGGGAC
TTTTCGTTCG ACCTCAACGT CAAGTCGATG CACCGCACCA TCCGCGCCTT CCTCCCTGCG
ATGCTGGAAG CGGGCCGCGG CTCGATCGTC AACATCTCGT CGGCCGCCGG CGTGTTCAAG
GCGGCACCGA ACCGCTACGT CTATGGCGCG ACCAAAGCGG CTGTCGCCGC GCTGACCCGC
GCGGTCGCGG TCGATTTCAT CACCCGCGGC ATTCGTTGCA ACGCGATCTG CCCGGGCACG
ATCGAAACGC CGTCGATGCT CGGCCGCGCC GCCGCGCTCG GGCCGCAGGG CCGCGAGATG
TTCGTGTCAC GCCAGCCGAT GGGCCGTCTC GGCAACGCCG AGGAGATCGC CGCGCTGGCG
GTGTACCTCG CCTCCGACGA AAGCGCCTTC ACCACCGGCG TCGCGCACAT CATCGATGGC
GGTTGGACGT TGTAA
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| Protein sequence | MSDRLTGKRA FVTAAAAGIG RASAIAFARE GAEVFATDID EAGLASLAEH GIARTAKLDV
RDTAAVEAIA REAGTVDILL NAAGFVHHGT VLDCSDTDWD FSFDLNVKSM HRTIRAFLPA
MLEAGRGSIV NISSAAGVFK AAPNRYVYGA TKAAVAALTR AVAVDFITRG IRCNAICPGT
IETPSMLGRA AALGPQGREM FVSRQPMGRL GNAEEIAALA VYLASDESAF TTGVAHIIDG
GWTL
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