| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3949 |
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| Symbol | |
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| ID | 6411630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4236642 |
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| End bp | 4238708 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713830 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_001992920 |
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| Protein GI | 192292315 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.772343 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCGCTG CTGAATCCGC CGCCCGACCG ACCAAACGGA TTGTGCTCGA CGATCCGCAT
TCGGTCGACA ACATGCAGGA AGCCGAGGTC ACGCGGGTGC GAAGCCTGCA GGGCTTCTGG
CGCTGGGCAC TGGTGGCCGC CGCTGCGGCC ACCATTCTGC TGTGCATCAA CCAGCAATTC
TCGCTGCGAT TCTTCATCGG CTACACCCAG CTCAACACGG AGTACTTCTA CCTCCTGATC
GCGCTGATGC TGCCGTTCAC CTTCCTGATC TTCCCGGGCA CATCGACGGC GCGGCTGGAT
CGTATCCCGC TGTACGACGT CGCGCTGTTT CTGCTCACGA TCGGCGCGGC GCTGGTGCTG
ATGAGCGCCA TCCGCAAGGC GGCGGAGGCC GGATGGGAAT TCGGCGGAGC GCCGACCCAC
GTCTTCATCG CTGGCCTCGT GATGTGGGCG CTGCTGATGG AGGCGCTACG CCGCACCGGC
GGCTGGAGCC TGCTGCTCTG CATCTTCCCG TTCACCGTGT ATCCGCTGTT CGCCGGCGCG
CGCTGGCTCG GCCCGCTCGG CGGCTCGCAA TCGACGCTGG AACAGGCGAC CGCCTATCAC
GTGCTGTCCG GCGAGAGCCT GCTCGGGATT CCGATCCAGG CCTTCGCCGA CACCGTGATC
GGCTTTCTGG TGTTCGGCAC CGCGCTAATG CTGACCGGCG CCGGAAAGTT CTTCATCAAC
CTGTCGTTCT CGATCTGCGG CACGTTCCGC GGCGGCGCCG CCAAGGTCTG CATCTTCGCT
TCGGCGTTGC TCGGCATGAT GTCCGGCTCG ATCATTTCCA ACGTGCTGAC GGCCGGGACC
ATGACCATCC CGGTGATGAA GAAGAGCGGC TTCCGCGCCT CCTACGCGGC GGCGATCGAG
GCCTGCGCCT CGACCGGGGC GGTGCTGGCG CCGCCGGTGA TGGGCGCCAC CGCCTTCGTC
ATCGCGCAGT TCCTCAACGT CTCCTACGCC GAGGTGGCAC TGGCGGCGAT CGTGCCGGCG
GCGCTGTATT ACATTGGCCT GTTCATGCAG GTCGACGCCT ACGCGGCGCG GCACGGGCTG
GAAGGCATTC CGCGCTCGGA ACTGCCGAGC CTATGGCAGA CGCTGAAGGA AGGCTGGTAC
TACGCCTTCG TCATCGCGCT GCTCGTGGTC ATGCTGCTGT ACTTCAAGCG CGAGAGCCAC
GCGCCGTTCT ATGCCACCGC GCTGCTGCTG GTGCTCAACC AGATCTTCTC CAAGGATACC
CGCTGGACCC TCGGCAGCAT CGTCCGCTTC CTGGAAGTCA ACGGCCGCAC CTTCGTCGAG
CTGATCGGCA TCCTGGCCGG CTGCGGCCTG CTGATCGGCG CGTTCTCGAT GACCGGCGTG
ATCTCCAGCC TCGCGGCCGA TCTGTTGCGG CTGGCCGGTG ACAATGCCTT CCTGCTGCTG
GCGATGTGCG CGATCACCAG CCTGATCCTC GGCCTCGGCC TCACCACCAC CGCCTGTTAC
ATCTTCCTGG CGATCCTGGT GGCGCCGGCG CTGGAGAAGC TCGGGCTGAA CCGGATGGCG
GTGCACATGT TCATCTTCTA TTGGGGCATG CTGTCGTCGA TCACGCCACC GGTCGCGATC
GCTTCCTTCG CCGCGGCCGG CATCGCCGGA TCTCCGGCAA TGAAGACCGG GTGGGAGTCG
ATGTGGGTGG GCAGTATCAT CTACTTCATC CCGTTCTTCT TCGTGATGAA CCCGGCGCTG
GTGCTGCAGG GCCCGGACCC GTATCTCGCC GCGCTTGGCC TGCTGACGCT GGCGGCGGCG
GGCACGCTGT GCATCTGCGG CGGCATCCAG GGCTATCAGG TCGGCATCGG CAATCTGCGT
CGCGCCGGCG CGCTGGAATG GCCGCTGCGC GTCGCGCTGG TGATCGGCGG CTTCGTGCTG
GCGACGCCGG GCGGCGGCAT CAATCCGCTG TCGCAGGTGC AAGTCACTTC GCTCGGCCTG
TGCCTGCTGG TCCCGACCCT GGCGATCGCG TTGCTGCTGG TCCGCCGGGG CGACGGCGGC
CAGCGTTTGG CGCGTCCCGT CGTGTAG
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| Protein sequence | MRAAESAARP TKRIVLDDPH SVDNMQEAEV TRVRSLQGFW RWALVAAAAA TILLCINQQF
SLRFFIGYTQ LNTEYFYLLI ALMLPFTFLI FPGTSTARLD RIPLYDVALF LLTIGAALVL
MSAIRKAAEA GWEFGGAPTH VFIAGLVMWA LLMEALRRTG GWSLLLCIFP FTVYPLFAGA
RWLGPLGGSQ STLEQATAYH VLSGESLLGI PIQAFADTVI GFLVFGTALM LTGAGKFFIN
LSFSICGTFR GGAAKVCIFA SALLGMMSGS IISNVLTAGT MTIPVMKKSG FRASYAAAIE
ACASTGAVLA PPVMGATAFV IAQFLNVSYA EVALAAIVPA ALYYIGLFMQ VDAYAARHGL
EGIPRSELPS LWQTLKEGWY YAFVIALLVV MLLYFKRESH APFYATALLL VLNQIFSKDT
RWTLGSIVRF LEVNGRTFVE LIGILAGCGL LIGAFSMTGV ISSLAADLLR LAGDNAFLLL
AMCAITSLIL GLGLTTTACY IFLAILVAPA LEKLGLNRMA VHMFIFYWGM LSSITPPVAI
ASFAAAGIAG SPAMKTGWES MWVGSIIYFI PFFFVMNPAL VLQGPDPYLA ALGLLTLAAA
GTLCICGGIQ GYQVGIGNLR RAGALEWPLR VALVIGGFVL ATPGGGINPL SQVQVTSLGL
CLLVPTLAIA LLLVRRGDGG QRLARPVV
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