Gene Rpal_3941 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3941 
Symbol 
ID6411622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp4228646 
End bp4229314 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content68% 
IMG OID642713822 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001992912 
Protein GI192292307 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCTATT CGAAGGAACA CAAGCAGGAA ACCCACGACC GCATCGTCCG GCGGGCGTCG 
GTGAAGCTGC GCGAAAAGGG CGCCCACGGC ATCGGCGTCG CCGATCTGAT GAAGGATGCG 
GGCCTCACCC ACGGTGGGTT CTACGCGCAT TTCGCCTCGC GCGAGGCGCT GGTGATCGAG 
GCGTTCAGCT ACGCGATGGA CCGCTCGACC GAGCGCTGGC GCAAGCTGGC GGAGGAACTG 
CCGCCGGAGC AGCGGCTGGC CGCGCTGATC GACGGCTATC TCAGCGCGGG CCACCGCGAT 
GATCCCGGCC GCGGCTGCGC GGTGCCGGCG CTCGGCGCCG AGATTGCGCG TGAAAGCCCG 
AAGACTCGCA AGGCGTTTGC TGCCAAGCTC GACGAGATGA TCGCGATGAT CGCGGCGCAA 
TATGTCGACG CTCCGCCGAA GACCGCCCGC AAGCAGGCGA TGGCGACGCT GGCGACGATG 
ATGGGAACGC TGGTGCTGGC GCGGATCGCC GGCAGCGGCG AATTGTCCGA CGAAATCCTC 
GCCGCCGGCC GCGAAGCCGC GCTGGGCGAG GCCGCTGCCT CTGGGTCGAA AAAGCCGACG 
CGGGTGATCA CGGCCAAGCC GAAAAAGACC GCAGCCAAGG CCGCGGCACG ATCGGCCGTG 
CAAGACTGA
 
Protein sequence
MRYSKEHKQE THDRIVRRAS VKLREKGAHG IGVADLMKDA GLTHGGFYAH FASREALVIE 
AFSYAMDRST ERWRKLAEEL PPEQRLAALI DGYLSAGHRD DPGRGCAVPA LGAEIARESP 
KTRKAFAAKL DEMIAMIAAQ YVDAPPKTAR KQAMATLATM MGTLVLARIA GSGELSDEIL 
AAGREAALGE AAASGSKKPT RVITAKPKKT AAKAAARSAV QD