| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3936 |
|---|
| Symbol | |
|---|
| ID | 6411617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4224067 |
|---|
| End bp | 4225140 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642713817 |
|---|
| Product | 3-hydroxyisobutyryl-CoA hydrolase |
|---|
| Protein accession | YP_001992907 |
|---|
| Protein GI | 192292302 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGGTG CCGTGACCGA ACCCGATCTG ATCGTCCGGC GCGAAGGTGC CGCCGGTGTA
ATCCGTCTCA ACCGGCCGAA GGCGATCAAC GCGCTGACGC TGGAGATGGC GCGCGAGCTC
GATCGGGCGC TCGACACATT CGCTGCTGAT CCGGATGTCG CTCTGATCCT GGTCGAGGGC
GCCGGTGAGC GCGGGCTGTG CGCCGGCGGG GACATCGTCG GCCTCTACAA CAGCGCGCGC
GAAGGCGGCG ATCTCGGCGA GGTGTTCTGG CGCGAGGAAT ACATCACCAA CGCTCGAATC
GCGAAGTATC CGAAGCCCTA TGTGGCGTTC ATGGACGGCT TGGTGATGGG CGGCGGCGTC
GGCATCGCCG GCCACGGCAG CCACCGCATC GTCACCGACA AGACCAAGAT CGCAATGCCG
GAAGTCGGCA TCGGCTTTTT CCCCGATGTC GGCGGCACCT GGCTGCTGAC GCGCTCGCCC
GGCGAGATCG GAACGTATTT CGGCCTGACC GGCGACATCA TGAACGGCGC CGACGCGATC
CACGCGCAAT TCGCTGATGC CTACGTGCCA ACCGCGAACT GGGCGGCGCT GCGTCAGGCG
CTCACCGAGG CACCGAGCGG GGCTTCGGCC GAGCAGGTCA GCGGCATCAT CGCGCGTTTT
GCGGAACAAC CGGCCCAAGG CCCCGCCGAA CTGCATCAGG CCGACATCGA CCGCTGGTTC
GGGCACGATA CGATCGAACA GATCGTCGCC GCGCTGGAGA GCGATGCGTC GGAGTTCGCG
CAAGCCGCGC TGAAGACGCT GCGGATCAAA TCACCGACCA GCCTCAAAGT GACGCTGAAG
CTGCTGCGCG CCGCGCGGCA CAGGGCGTCG CTGGAAGAGT GTCTGGTGCA TGAATATCGC
GCCGCACTGC AGGTGTTCGT CAGCGACGAT TTCGTCGAGG GCGTCCGTGC CGCGGTGATC
GACAAGGACC GCCAGCCGAA ATGGCGGCCT GCGACGATCG CAGAGGTGAC GCCGGAGATC
GTGGCGCGCT ACTTTGAAGA TCGCGGCGAC GACGAGCTGA AATTTCCGGG CTGA
|
|---|
| Protein sequence | MNGAVTEPDL IVRREGAAGV IRLNRPKAIN ALTLEMAREL DRALDTFAAD PDVALILVEG
AGERGLCAGG DIVGLYNSAR EGGDLGEVFW REEYITNARI AKYPKPYVAF MDGLVMGGGV
GIAGHGSHRI VTDKTKIAMP EVGIGFFPDV GGTWLLTRSP GEIGTYFGLT GDIMNGADAI
HAQFADAYVP TANWAALRQA LTEAPSGASA EQVSGIIARF AEQPAQGPAE LHQADIDRWF
GHDTIEQIVA ALESDASEFA QAALKTLRIK SPTSLKVTLK LLRAARHRAS LEECLVHEYR
AALQVFVSDD FVEGVRAAVI DKDRQPKWRP ATIAEVTPEI VARYFEDRGD DELKFPG
|
|---|
| |