Gene Rpal_3924 details

Gene Information

• Locus tag: Rpal_3924
• ID: 6411604
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 4208560
• End bp: 4209018
• Gene Length: 459 bp
• Protein Length: 152 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 642713805
• Product: DNA mismatch endonuclease Vsr
• Protein accession: YP_001992896
• Protein GI: 192292291
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3727] DNA G:T-mismatch repair endonuclease
• TIGRFAM ID: [TIGR00632] DNA mismatch endonuclease Vsr

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACTGATG TTCTATCGCG CGAACAACGG CGGTTTAATA TGAGCCGCAT ACGCGGCTCG 
AATACCAAGC CGGAGGTGCT GGTCCGCTCT GCTCTCCATG CGCTGGGGTT TCGGTTCAGG 
CTGCATGATC GGAGGCTTCC GGGGACGCCA GATATTGTGT TGCGGCGGCA CCGTGCCGTT 
ATTTTTGTAA ATGGCTGCTT TTGGCACGGT CATGGCTGCA AGTACTCAAA GATGCCAAAT 
ACCCGTGCTG AATTTTGGCG GCAGAAGATT AGCCGGACCA AAGCGCGGGA CACGGCGGCA 
ATCGAGCAGC TGCTTAATCT CGGCTGGAAT GTAATTGTGG TTTGGGAGTG CTCTCTCCGT 
GGCCGCGATC AAGTTGCCCG GAATTCAGCC TGGACGTCGA TAAGGACAGC GCTCGCGAAA 
CGCCACCCAA CAATTTCAGA GGTTGTTCCG TTACACTAA 

 

Protein sequence

MTDVLSREQR RFNMSRIRGS NTKPEVLVRS ALHALGFRFR LHDRRLPGTP DIVLRRHRAV 
IFVNGCFWHG HGCKYSKMPN TRAEFWRQKI SRTKARDTAA IEQLLNLGWN VIVVWECSLR 
GRDQVARNSA WTSIRTALAK RHPTISEVVP LH