| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3890 |
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| Symbol | |
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| ID | 6411570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4175199 |
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| End bp | 4177673 |
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| Gene Length | 2475 bp |
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| Protein Length | 824 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713772 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001992863 |
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| Protein GI | 192292258 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGGCTG CCGTCACTCA AGTTTCCGAA AATTCGACCA ATCAGCTTGC TGCCGACTTA
ACCGTGCTCC AGCGCAAGTG GTACGCGGCG ATTCAGCCGG GACAGTCGCT GCCGAGCTAC
GAAGAGGTGA TGCTCGGCAG CCTCGGGCGG CTCGCCGATC ATCTGGTGCT GCTGGAGATC
GACGGCGAGA CGCCGGAAGT GTCCCGCACC GGCAGGTATG CCCAGCAATG GCTCTGCGAC
GAGCGCTGGG ACATTCCGCT CGACGCGCTG TCGCCGGACT GCGGCACCGC GCTGGCACAA
GCCGCCTCGG GCGCACTGCA GAACAAGCGG CCGCATCTCG GCACCGCGCA TTGCGTGCGC
GACGGCATCG TGCAGCGCTA CACGCTGCTG GCGCTGCCGA CCGCCTCGCG CTGGGGCGGT
ACGCTGGTCG GCGTCTATGT CAATGCAGAG GCGCAGCGCT ACAACCTGCT CGACGCGATC
TTCTCATCGA CCGACGACGG CATCGTCGCG CTGACGGCGA TCCGCGGCCC CGACCGCCGG
CCGTTCGATT TTCAGATCGT GCACGTCAAC CAAGGCGCCT CGCAGCTGCT GCGGCACCCG
GTGTCCGAGC TGCGCTGGAG CCGGCTGTCG GCCGGACATC ATCTGCTGTG CAGCGCCGAC
GTCGCCGGGC GATTGATCGA GCTGGTCGAT TCCGATGCCA GCGTCACCTT TGCGGTCGAC
AGCGGCGACC GCAATCTCAG CGTCAGCGCC ACCGCGTTCG GCGACGTGGT ATCGGTGACC
ATCTCCGACG TCACCTCGCT GAAGAAGCGC GAGGAGTCGT TCCGCCTGCT GTTCGACGGC
AATCCGATGC CGATGTGGGT GTTCGACGCC CAGAGCTTCG AATTCCTCAG CGTCAACGAT
GCCGCGGTGG CGCATTACGG CTATCCGCGG GAACGGTTCT TGCGGATGTC GCTGCGCGAG
ATCTGGCCGC GCGAAGAGTG GATCGCGCAC GGCCAGACGC TGCTGGAGAT GCGCGACAGC
TATCAGTCCG AGGGCAACTG GCGTCACATC AAAGCCGACG GCTCCGAGAT CCATGTGCTG
ACCTTCGGTC GCCGCGTGCT GTTCGACGGC CGCGACGGCT TCCTGGTCGC GGTGGTCGAC
ATCACCGAGC GCCGCAAGGC CGAAGCCAAG ATCGCCCATA TGGCGCATCA CGACGGGCTC
ACCAATCTGC CGAACCGCGC GCTGTATCAG CAGCGGTTGG AGCAGGCGCT GGCGCAGGCC
CGCGGTAGCG GCACCATGGT GGCGGTGATG TGCGTCGACC TCGACCTGTT CAAGAACGTC
AACGACTCGT TCGGCCATCC GATGGGCGAC CGGCTGCTGC AATGCGTCGC CGAGCGGCTG
CGGCAGCAGA TCGGCGACGG CGATCTGGTG GCGCGGCTCG GCGGCGACGA ATTCGCGATC
GTGCTGACCT CGCTGGCCAC CCCGAACGAG GCCAGCAGCT TTGCGGCACG GCTGATCGAG
ATCCTGAGTG CGCCCTACGA CATGGATGGG CTCGAAGTGG TGATCGGCGC CTCGATCGGG
ATCGCGCTGG CGCCCTCCGA CGGCGATGAA TGCGAGGCAC TGTCGCGCAA TGCCGACATG
GCGCTGTACC GCGCCAAGGC GGCGGGCGGC GGCTGCCACC ATTTCTTCGA GAAGGAGATG
GACCGTCAGG CGCAGATCCG CCGCGACATG GAGCTCGACC TGCGGCAGGC GTTCGCGCGC
GGCGAATTCG AGCTGCATTA TCAGCCGCTG ATCGACCTCG CCGAAGACCG GATCGGCGGC
TTCGAGACGC TGCTGCGCTG GCGCCATCCC GAGCGCGGCA TGATCTCGCC ATCCGACTTC
ATTCCGGTGG CCGAGGATAT CGGCCTGATC GTCGGCCTCG GCGAATGGGT GTTGCGGCAG
GCGTGTCTGG AAGCCGCATC GTGGCCGTCC GACGTCAAGG TCGCGGTCAA TCTGTCGCCG
GTGCAATTCC GCAGCCGCAA TCTGGTGCAG GTGGTGATCT CGGCGCTGGC GCAATCGAGC
CTCGTGCCGC ACCGGCTCGA ACTCGAAATC ACCGAGTCGC TGTTTCTCGC CGACAGCGAA
GCCAACCTTG CCACGCTGCA TCAGCTCCGC AGCCTCGGGG TGCGGATCTC GATGGACGAT
TTCGGCACCG GATACTCCTC GCTCAGCTAT CTGCGCAGCT TCCCGTTCGA CAAGATCAAG
ATCGACCGCT CGTTCGTGAA GGATCTGACC CAGCGGCCGG ACTGCCTCGC GATCGTGCGG
GCGATTGCCG GGCTCGGCCG CAGCCTCGAC ATCACCACGC TGGCCGAAGG CGTCGAAAGT
GTCGAACAGC TCGACGTGCT GCGCGCCGAA GGCTGCCACG AGGTGCAGGG ATTCCTGTTC
AGCGCGGCGC GACCGGCCTC GGAGATTTGC GGGCTGTTGA TGCGGTTCGG GCGGCAGGCG
TCGCAGGCGG CGTGA
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| Protein sequence | MSAAVTQVSE NSTNQLAADL TVLQRKWYAA IQPGQSLPSY EEVMLGSLGR LADHLVLLEI
DGETPEVSRT GRYAQQWLCD ERWDIPLDAL SPDCGTALAQ AASGALQNKR PHLGTAHCVR
DGIVQRYTLL ALPTASRWGG TLVGVYVNAE AQRYNLLDAI FSSTDDGIVA LTAIRGPDRR
PFDFQIVHVN QGASQLLRHP VSELRWSRLS AGHHLLCSAD VAGRLIELVD SDASVTFAVD
SGDRNLSVSA TAFGDVVSVT ISDVTSLKKR EESFRLLFDG NPMPMWVFDA QSFEFLSVND
AAVAHYGYPR ERFLRMSLRE IWPREEWIAH GQTLLEMRDS YQSEGNWRHI KADGSEIHVL
TFGRRVLFDG RDGFLVAVVD ITERRKAEAK IAHMAHHDGL TNLPNRALYQ QRLEQALAQA
RGSGTMVAVM CVDLDLFKNV NDSFGHPMGD RLLQCVAERL RQQIGDGDLV ARLGGDEFAI
VLTSLATPNE ASSFAARLIE ILSAPYDMDG LEVVIGASIG IALAPSDGDE CEALSRNADM
ALYRAKAAGG GCHHFFEKEM DRQAQIRRDM ELDLRQAFAR GEFELHYQPL IDLAEDRIGG
FETLLRWRHP ERGMISPSDF IPVAEDIGLI VGLGEWVLRQ ACLEAASWPS DVKVAVNLSP
VQFRSRNLVQ VVISALAQSS LVPHRLELEI TESLFLADSE ANLATLHQLR SLGVRISMDD
FGTGYSSLSY LRSFPFDKIK IDRSFVKDLT QRPDCLAIVR AIAGLGRSLD ITTLAEGVES
VEQLDVLRAE GCHEVQGFLF SAARPASEIC GLLMRFGRQA SQAA
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