Gene Rpal_3882 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3882 
Symbol 
ID6411562 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp4166327 
End bp4166959 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content67% 
IMG OID642713764 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001992855 
Protein GI192292250 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGACC GCCGAAGTGG CTCAATTTCC TCGCGAAAAC AGCCGCAACA GGCACGCTCG 
ACCGAGCTGG TCGCGGCCAT TCTGGAGGCG GCTGTTCAGG TTTTGGCGAA GGAAGGCGCG 
CAGCGCTTCA CCACGGCGCG GGTCGCCGAC AAGGCCGGCG TCAGCGTCGG CTCGCTGTAT 
CAGTACTTCC CCAACAAGGC CGCGATCCTG TTCCGGCTGC AGAGCGACGA GTGGCGGCAA 
ACCTTCGAGA TGCTGCGCGA CATTCTCGAG GATCGCCGCG ATTCGCCACC GCAGCGGCTG 
CGCCGCTTGG TACATGCCTT TATCCAATCC GAGTGCGACG AGGCCGAAGT CCGTGGCGCG 
CTTGATGACG CCGCGCCGCT GTATCGGGAC GCGCCGGAGG CTCGCGCCGC GCGCAAGGCG 
ATCGACGGCA CCATGGCGGC GTTTCTGCGC GAGGCGGCGC CGCAGAGTTC CGAGGCGGCG 
CGCGTGCGGG CAGCGGAGCT GATCAGCCGC ACGATTGCCG CGCTCGGCAA GGATTTCTCC 
AGTCGTCCGC GCGCGGCCGC CGAGATCGCG GCGTATGCGG ACGCGGTTGC CGATATGCTA 
TGCGCTTATC TGAAGACGCT GCGACGAGGT TGA
 
Protein sequence
MTDRRSGSIS SRKQPQQARS TELVAAILEA AVQVLAKEGA QRFTTARVAD KAGVSVGSLY 
QYFPNKAAIL FRLQSDEWRQ TFEMLRDILE DRRDSPPQRL RRLVHAFIQS ECDEAEVRGA 
LDDAAPLYRD APEARAARKA IDGTMAAFLR EAAPQSSEAA RVRAAELISR TIAALGKDFS 
SRPRAAAEIA AYADAVADML CAYLKTLRRG