| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3858 |
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| Symbol | |
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| ID | 6411538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4146844 |
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| End bp | 4147548 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642713740 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001992831 |
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| Protein GI | 192292226 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGTCG ACAAAGTCGC CCTGATCACC GCGGGCGGCA GCGGCATGGG GGCTGCGGCG
GCGCGCCGGC TGGCCGCGGA CGGCTTTCGC GTCGCGGTGC TGTCGTCGTC CGGCAAGGGC
GAAGCGCTTG CGAGCGAACT CGGCGGCTTC GGCGTCACCG GATCGAACCA GTCGAACGAC
GATCTGAAGC GCCTGGTCGA TCAGGCGATG GCCAAGTGGG GCCGGATCGA CGTGCTGGTC
AACAGCGCCG GCCACGGGCC GCGCGCGCCG ATCCTCGAGA TCACCGACGA GCAGTGGCAT
CAGGGGCTCG ACGTCTATTT CCTCAACGTC GTCCGCGCCA CCCGGCTGGT GGCGCCGATC
ATGCTGCAGC AGAAGGCCGG CGCCATCATC AACATCTCGA CCGCCTGGGC GTTCGAGCCG
AGCGCGATGT TTCCGACCTC GGCGGTGGCG CGGGCGGGGC TCGCCGCCTA CACCAAGATC
TTCGCCGACC AATATGCCGC CGACAACGTC CGGATGAACA ACGTGCTGCC GGGCTGGATC
GACAGCCTGC CGGCCACCGA GCAGCGACGC GACACCGTGC CGATGAAGCG CTACGGGACC
AGCGACGAAA TCGCCGCCAC CATCGCCTTC CTCGCCTCCG ACGGCGCCGC CTACATCACC
GGCCAGAACA TCCGGGTGGA CGGCGGCCTG ACGCGGGCGG TGTAA
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| Protein sequence | MAVDKVALIT AGGSGMGAAA ARRLAADGFR VAVLSSSGKG EALASELGGF GVTGSNQSND
DLKRLVDQAM AKWGRIDVLV NSAGHGPRAP ILEITDEQWH QGLDVYFLNV VRATRLVAPI
MLQQKAGAII NISTAWAFEP SAMFPTSAVA RAGLAAYTKI FADQYAADNV RMNNVLPGWI
DSLPATEQRR DTVPMKRYGT SDEIAATIAF LASDGAAYIT GQNIRVDGGL TRAV
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