| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3838 |
|---|
| Symbol | |
|---|
| ID | 6411516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 4125646 |
|---|
| End bp | 4126389 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642713719 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001992812 |
|---|
| Protein GI | 192292207 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.483923 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATG CTGCCACCGA TCGACAAAGC GCGGCGGCAA TCGTGTTCGG GGGCTCGCGC
GGCATCGGCG CGGCGATCGC GCAGCAATTG GCCGACGACG GTTTCGCGGT CGCCCTGACC
TATCTCGGCA ACACCGACAA GGCCGAAGCC GTCAGCAATT CGATCCGGAC GGGCGGAGGC
CGGGCGATCG CCGTTCGGGC CGATAGTCGG GATCCATCGG AGGTCCGCCA CGCCGTCGAG
ACGGTTTCGC GCGAGCTCGG CCCGCTCGAC GTCGTCGTCG TCAATGCCGG CGCGCTTCGT
ATCGGCCCGC TGCGGACGTT TGCCCGGGAG GATTTCGACC TGCTCGTCGA CGTCAATATC
CGCGGCGTGT TTCTCGCGAT CCAGGCGTCG ATGCCGCTGC TCCGCGACGG CGGGCGGATC
ATCACCATCG GCAGCAACGG CGCGGTGCGA ATCGGCTCGC CCGAAGGCGG CGTCTATGCG
ATGACCAAGG CCGCCGTCGC CAGCCTGGTG CAGAGCCTCG CGCTCGAACT GGCGCCGCGC
GGCATCACCG TCAACAACGT CCAGCCCGGC CCGATCGAAA CCGACATGAC CGCCGGCATG
ATCGAGGCTC TGGTCGACAG GATCCCGCTC CGGCGGATCG GCAGGCCCAG CGAGGTCGCC
GCGCTGGTGT CGTATCTGGC GAGCAGCGAT GCCGGCTACA TGACTGGTGC CAACCTGACC
ATCGACGGCG GCATGGTGCT CTGA
|
|---|
| Protein sequence | MTDAATDRQS AAAIVFGGSR GIGAAIAQQL ADDGFAVALT YLGNTDKAEA VSNSIRTGGG
RAIAVRADSR DPSEVRHAVE TVSRELGPLD VVVVNAGALR IGPLRTFARE DFDLLVDVNI
RGVFLAIQAS MPLLRDGGRI ITIGSNGAVR IGSPEGGVYA MTKAAVASLV QSLALELAPR
GITVNNVQPG PIETDMTAGM IEALVDRIPL RRIGRPSEVA ALVSYLASSD AGYMTGANLT
IDGGMVL
|
|---|
| |