| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3836 |
|---|
| Symbol | |
|---|
| ID | 6411514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 4121170 |
|---|
| End bp | 4123395 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642713717 |
|---|
| Product | Alpha,alpha-trehalose-phosphate synthase (UDP-forming) |
|---|
| Protein accession | YP_001992810 |
|---|
| Protein GI | 192292205 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0380] Trehalose-6-phosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.745557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGCA CCAAGACAGC CTTGAGGTAT CTCGGCCTCG GAATCCTAGC GGCCGTGGTT
CTCGGGCTCG CCATCGCGCC CTTCTCAAAT CGATTGATCG AGCAGTGGTC TCGAAACGAC
GTCGAGGCCC GATCCAGGCT GGTCTACAAC GCCGTCCAAA GCCAAGTAGT TGCCGCGTTG
GAAGAGCAAA ACGAGGTGCA GCTTTCACTG CTGTTCAGCG CTGTAGCACT CGATCCGCGC
ATTTTGGCGG TCGGACTCTG TGCTCAACCG GAGAGACTTG TCGCGCCGAC AAAGATGATG
CCGTCGACAT TCTCTTGCGA AAAGGTCGCG CGGTCCGACG CCGAAAGCTT TTCGACCATC
GCGATTGACG CGCATCGCAT TATGGTCGGC GCCTTTCCGA TCTCCCATGG CGACATGAGG
TCCTATCTCG TCGTGCTGCA CGATCTGAGC TTCATCGACA AACGCTCGGG CGAGGCGCAA
GCCTTCCTCC TCGCCGTGTT GTTCGGGGTC GCCGTCGTGA TGGCGGGCGG CGCCACCGTT
TTCGTGCTGG TGACGCTGCG CGGCTGGATG GAATCGCTGC GACGCGCTGT CGAAGATGTC
CGCACCGGAA CCGGTTCCCT CGCAGCGGCT CGCGATCAGA GCATAATCGA CTTGCAGATC
AAGAAGCTGC TCAGCGAGGT TGAGGTTGGA CGCAGCGTGA TCAATGCGAC CCAGATCGAA
TGGTCGCCGA CGTCGCTACA GCAATTGCTG CACGACATCC TGCCGGACGC CGAAGTGTTG
ATCGTTTCCA ATCGCGAGCC CTATATCCAT AATCGCGACG GCGACGGCAT CAGCGTGCAG
GTACCGGCGA GTGGCCTCGT GTCCGCCCTC GAGCCCGTTA TTCGCGCGTG CGGAGGGACC
TGGATCGCCC ATGGCAGCGG CAGCGCCGAC CATGAGACCG TCGACCGTCA CAACCGCATC
GACGTGCCGC CCGATAATCC CGCCTATGTG CTGCGCCGGA TCTGGATTTC AGAGGAGGAA
CAGGAAGGCT TTTATTACGG CTTTGCCAAC GAAGGCCTCT GGCCGTTGTG CCACATCGCC
TTCGTACGCC CCTTGTTCCG GGAGAACGAC TGGCGGCTGT ACCGTGAGAT CAACGAGCGG
TTCGCCAACG CCGTCGTTCA GGAGGCGAAA ACAGAGGATC CGATCGTCCT CGTCCAAGAT
TATCACTTCG CCTTGGCGCC AAGGATGATC CGAAACAAAC TGCCAAAAGC CACGATTATA
ACCTTCTGGC ACATTCCGTG GCCGAATGCA GAGACCTTCA GCATATGCCC GTGGAAGGAA
GAGATCATCG ACGGCATGCT CGGCTCTACG ATCTTGGGCT TTCATACCCA GTTTCACTGC
AACAATTTCT TTGAGACCGT AGATCGCTTC GTCGAGAGCC GGATCGATCG CGAGCACGCC
ACCGTGACGC TTGGCGGCCA TGAAACGATG ATCCGACCCT ATCCGATTTC GATCGAATGG
CCTCCGACGG CACTGCAGGA GCAGCCGCCG GTGGAAAAAT GCCGGGCTGA TATCCGCGAA
AAGCTGGGCC TCGCACCGGA TACCCGGATC GCCGTCGGAA TCGAACGATT CGACTACACC
AAGGGCATCC TCGATCGAAT GCGCGCGGTC GACGAGTTGC TGCTCAGCGA ACCGCAATGG
AAGGGGCGGC TCGTCTTCGT GCAGGTTGCC GCACCGACGC GCAGCAAGCT GACGAGCTAC
AGCACTCTGC AAAGCGACGC TATTGCACTC GCCGACCAGA TCAATGACCG CCATCGCGCT
GGCGGCTACA CACCGATCCA ACTGCTGATC CGCCACCATT CGGCAATGGA GGTCTTCAAG
CTGTTTCGCG CGGCCGACCT TTGTGTCGTA TCCAGCCTCC ACGATGGGAT GAACCTCGTG
GCGAAGGAAT TCGTCGCTGC CCGCGACGAC GAATGCGGCG TGCTTGTTCT GTCGAGCTTC
ACCGGCGCAG CACGTGAACT GTCCGAGGCG TTGATCGTCA ATCCGTATCA CGTCCACGAA
ATGGCGACGG CGCTCGCGAC GGCGCTGAAC ATGCCCGAGC GCGAGCAGAA GGAAAGGATG
AGAGCGATGC GGAAGCAGGT CCGTGCATCC AATGTCTACC GCTGGGCCGG CCGGATGCTG
ATGGACGCCG CGAGCTGTCG ACGTCGGCAA CGCATACTTG ACCTTGCGGG TTCACAGCCG
CACTGA
|
|---|
| Protein sequence | MQRTKTALRY LGLGILAAVV LGLAIAPFSN RLIEQWSRND VEARSRLVYN AVQSQVVAAL
EEQNEVQLSL LFSAVALDPR ILAVGLCAQP ERLVAPTKMM PSTFSCEKVA RSDAESFSTI
AIDAHRIMVG AFPISHGDMR SYLVVLHDLS FIDKRSGEAQ AFLLAVLFGV AVVMAGGATV
FVLVTLRGWM ESLRRAVEDV RTGTGSLAAA RDQSIIDLQI KKLLSEVEVG RSVINATQIE
WSPTSLQQLL HDILPDAEVL IVSNREPYIH NRDGDGISVQ VPASGLVSAL EPVIRACGGT
WIAHGSGSAD HETVDRHNRI DVPPDNPAYV LRRIWISEEE QEGFYYGFAN EGLWPLCHIA
FVRPLFREND WRLYREINER FANAVVQEAK TEDPIVLVQD YHFALAPRMI RNKLPKATII
TFWHIPWPNA ETFSICPWKE EIIDGMLGST ILGFHTQFHC NNFFETVDRF VESRIDREHA
TVTLGGHETM IRPYPISIEW PPTALQEQPP VEKCRADIRE KLGLAPDTRI AVGIERFDYT
KGILDRMRAV DELLLSEPQW KGRLVFVQVA APTRSKLTSY STLQSDAIAL ADQINDRHRA
GGYTPIQLLI RHHSAMEVFK LFRAADLCVV SSLHDGMNLV AKEFVAARDD ECGVLVLSSF
TGAARELSEA LIVNPYHVHE MATALATALN MPEREQKERM RAMRKQVRAS NVYRWAGRML
MDAASCRRRQ RILDLAGSQP H
|
|---|
| |