Gene Rpal_3813 details

Gene Information

• Locus tag: Rpal_3813
• ID: 6411491
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 4095502
• End bp: 4097526
• Gene Length: 2025 bp
• Protein Length: 674 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 642713694
• Product: AAA ATPase central domain protein
• Protein accession: YP_001992787
• Protein GI: 192292182
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0466] ATP-dependent Lon protease, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTACAA GCGATTCGAA AAGCAAGGCG TGGAACTACT GGCTGACGAT GCTCGAGCAG 
GACCGTGCGG AGTGCGCGCC GGCGCCGGAC GGCCCGGAAA TCGTCGAGCG CCCGACCGCC 
GCCCTCGTGA CGCTGCTGTG CCAGACGCAG CGCGAGGCGG TCGACTATGC GATCGCGACC 
ACCGAGAACG CGCTGCGCGA CCGCCAGGAT CGTCCGTACG CCGATATCGC GGAGATGCGG 
CGTGGGACCG GCGTCGACGA AAAAATCTGG TCGGAAGCGT GCCGCGTGAT CGCCGGTGAC 
CTCGAAGCGA TCGGGGGGCC GCGCGTCTCC GAGGCTGCGT TGTGCTGGTG GATGCTTGCG 
GCGTCGCCAC GTGACCCGGA GACCTGCTCC GTAGCAGTCG ATCTCGATCA ACTCGCCAGC 
GGCGTCCGGT GGCCAGAGAA GGCCGACGAG ATCAAAGCCC GCGTGCGCGT CTGGCTGGAT 
GCCCATGCCG GCGAATACGA GCACGACGAT CGCGACCTTT TCGCTATTGC CGAGGACGCT 
GTCCAGCGAG CCACCGAAGC CAAGGATTCG ACGATGAGGA AGGTCTACGA CGGCGTGCCG 
CTCTCCGTGC TCATGTGCGA CGACGAGACC GCAGCAGTGA AGCTGGTCGT GCACTACACG 
AAAAAGGTCG CCGGCATGAC GGGAGCCAAG CTGCCGGCGG TGCTGTCTGT GTCCAGCACG 
CCTCCGAAGG ACGGCGACCG CCGCGCATGG TGGCGAACAG AGTGCCGCCG GATGTCGAGC 
GATCTGACCG AGCGAGCCGA CGACGGCCTC GCCGGCGCAG TTGCGCTCAC ATGGCGCATG 
CTCGCCGCCG ACCAGGCCGA CACGCGGTCA TTTCTGCCTG TGCTGCCGGC GCTGACGTAC 
CTCGCCGACC GGTGCGACTG GTCGGACGAC GACAAGGCCA AGGTGCAGGC GCGCTTGCGC 
ATCTGGACCC TGGCGGCCAG CGGAGAATAC GGCCACGAAA AGCGGCCGAT GCTCGAGATC 
GCTTCGCGCG AGACCGACAT GAAGATCGTC CGCGCCAGCG ATCTCGATCC GGAGGTCGAG 
GAAGAGTTAT TCTTCAATCG CTCACCTTCG GCGTCGGGCC GCCGGAAAGT GCGCCTCCCG 
TCGTCGCCCA GGCCGAGGCC GGCGCCTGAC GGACCTGCTG TCGTCGTGAT GACGGAGGCT 
CCGACAGAGA AGAAGCATCT GCAGGACGTC TGGAAGCGCC TGGATGGCGC CGACGTCGCC 
CTGGTCGTCT GCCGAGATGC CTGCGCCGTC CGGCGGGCGC TGGAGGCAGA GTACCCGCAC 
GCGCGGGCCG CCGTGGCGAA GCTGACGCAG GATCTGCGCG ACGGCGAACC GGTGCGGATG 
CGGCCGACCC TTCTCGTCGG CCCCCCGGGC TCCGGCAAGT CGCGCATGGT ACGCCGCCTG 
GCCGAGCTCC TCAACGTCTA CGTCTACCGC GTCGATGCGA CCGCGGCGGC CGACGGATTT 
TTCGCCGGCA CCAATCGCTC ATGGCACTCG TCGGCCCCCT CCGTGCCCGC GCGCGCGATC 
GCAGCGTCCA TGCGCGCCAA CCCGATCGTG ATGGTCGACG AGATCGAGAA GGCCGCCGAG 
AGCGCGCTGA ACGGCAACCT ATGGGCGGCG ATGACCCCAT TTTTGGAGCG CGAGACATCG 
CAGCGGTACC GCGACGTCGG CCTCGACGCC GAGCTCGATC TCTCGCACGT CAGTCACATC 
GCCACCGCGA ACAGCGTCGA CCGGATCCCC AGCTTTTTGC GCGACCGCTT CCGGCTGATC 
CGCGTCCCGG CCCCCTCGCT GTCGCACCTG CCGGCGCTGG CGGCGCTGGT CCTGCAGGAC 
ATCGCGCGGG ATGACGATGC GCGCGCTGGG GCCCCGCCCC TGGCGCCCGA CGAGCTCGAC 
GTCATCGGCC TGGCGTGGGC GCGGGAGCGA TACTCCATGC GCAAGTTGGC CAGGCTGGTC 
GAGGCGACCC TCGAAGCGCG CGACGCCTGC GCGCCGCGGC ACTGA 

 

Protein sequence

MSTSDSKSKA WNYWLTMLEQ DRAECAPAPD GPEIVERPTA ALVTLLCQTQ REAVDYAIAT 
TENALRDRQD RPYADIAEMR RGTGVDEKIW SEACRVIAGD LEAIGGPRVS EAALCWWMLA 
ASPRDPETCS VAVDLDQLAS GVRWPEKADE IKARVRVWLD AHAGEYEHDD RDLFAIAEDA 
VQRATEAKDS TMRKVYDGVP LSVLMCDDET AAVKLVVHYT KKVAGMTGAK LPAVLSVSST 
PPKDGDRRAW WRTECRRMSS DLTERADDGL AGAVALTWRM LAADQADTRS FLPVLPALTY 
LADRCDWSDD DKAKVQARLR IWTLAASGEY GHEKRPMLEI ASRETDMKIV RASDLDPEVE 
EELFFNRSPS ASGRRKVRLP SSPRPRPAPD GPAVVVMTEA PTEKKHLQDV WKRLDGADVA 
LVVCRDACAV RRALEAEYPH ARAAVAKLTQ DLRDGEPVRM RPTLLVGPPG SGKSRMVRRL 
AELLNVYVYR VDATAAADGF FAGTNRSWHS SAPSVPARAI AASMRANPIV MVDEIEKAAE 
SALNGNLWAA MTPFLERETS QRYRDVGLDA ELDLSHVSHI ATANSVDRIP SFLRDRFRLI 
RVPAPSLSHL PALAALVLQD IARDDDARAG APPLAPDELD VIGLAWARER YSMRKLARLV 
EATLEARDAC APRH