| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3793 |
|---|
| Symbol | |
|---|
| ID | 6411471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4074257 |
|---|
| End bp | 4074742 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642713674 |
|---|
| Product | VRR-NUC domain protein |
|---|
| Protein accession | YP_001992767 |
|---|
| Protein GI | 192292162 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGTCC GCCTCCGATC TCTTCGAGGC CTGCGCCGAC GGCGTCGCTC ACCTATACGC
ACGGTGTCGC CGGCGAGGGG CGGGGCGCCA CGCCGGAAGC GCAACACGGA GGAGCACGAC
GCCCAAGTCG CCTTATTCCG CGACCACATT GTGCCGCGCC TGTGGCCCGA CGCCGTAGCC
TTCGCAATCC CGAACGGCGG TAAGCGTCAC GCCAAGGTCG CTGCCGAGAT CAAGGCCGAG
GGCGGAGCGG CGGGCGTCCC GGATATCTTC GTGATGTGGC GCAAGCAGGT CTATTTTCTT
GAGATGAAGA AGGCAAAGGG CGGCCGGGTG AGCGCAGAGC AGCGCGTGAT GATGGCGCGC
CTGCGCGGCG CCGGGGCGAT CTGCGAAGTC GCCAAGGGAC TGCATGAGGC AATCGCGCAG
CTGGAGGCAT GGGGGCTGCT GAGGCCGGCA GGAGAGGACA CTGGGGCACG GGAGATCGCC
GCATGA
|
|---|
| Protein sequence | MVVRLRSLRG LRRRRRSPIR TVSPARGGAP RRKRNTEEHD AQVALFRDHI VPRLWPDAVA
FAIPNGGKRH AKVAAEIKAE GGAAGVPDIF VMWRKQVYFL EMKKAKGGRV SAEQRVMMAR
LRGAGAICEV AKGLHEAIAQ LEAWGLLRPA GEDTGAREIA A
|
|---|
| |