| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3733 |
|---|
| Symbol | |
|---|
| ID | 6411411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3995228 |
|---|
| End bp | 3997429 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642713615 |
|---|
| Product | glycogen debranching enzyme GlgX |
|---|
| Protein accession | YP_001992708 |
|---|
| Protein GI | 192292103 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.635331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA CCACCGAAAC GCTGGAGCTG CCGCCGGAGA CCAAGCCGGC AGAACCTGCA
GCGAAGCCGC AGGCGGTCCC CGGGTACAAC GTTTTCAACG ACACCAAAGC GGTGCGCGAA
GGCCTGCCTT ATCCGCTCGG CTCGTGCTGG GACGGCCATG GTACCAACTT CGCGCTGTTC
TCCGCCAACG CCACCAAGGT CGAAGTCTGC CTGTTCGATG GCGACACCGA GCGTCGGATC
GAGCTGCCCG AATATACCGA CGAGGTGTTT CACGGCTACA TCCCCGATAT CGGCCCCGGC
ACCTTCTACG GCTATCGCGT CTATGGACCT TATGAGCCGG AGAACGGTCA CCGCTTCAAT
CCGAACAAGC TGCTGCTCGA CCCTTACGCG CGCGCCCACG CCGGCTTGCT GACCTGGGAT
CCTGCCGTCT TCGGCTATGT GATGGAGAGC GGCGACGACA CCACATTCGA CGAGCGCGAC
AGTGCGCGCT TCGTGCCGAA ATGTGTGGTG GTCGATCCCG ACTTCGACTG GAAGGGCGAG
CCCGGCCGCA AATTCGTGCC GTGGGACCAA GCGATCATCT ACGAGACCCA CGTCAAGGGT
TTCACCAAGC TGCACCCAGA GGTGCCCGAG CATCTGCGCG GAACCTATGC GGGCTTCGGC
ACCAAGCCGG TGGTCGATTA CATTTCCTCG CTCGGCGTCA CCGCGGTCGA GCTGCTGCCG
ATCCACACCT TCGTCAATGA CAGCTATCTG CTCGACAAGA ACCTAGTGAA TTACTGGGGC
TACAACACCA TCGGCTTCTT TGCGCCCGAC CCGCGCTATG CCGCCGACGT GCCCAACAGC
TTGCGCGAAT TCAAGGAGAT GGTGGCGCGG CTGCACGATG TCGGCCTCGC CGTGATCCTC
GACGTGGTTT ACAACCACAC CGCCGAAGGC AACGAGCTCG GCCCGACGCT GTCTTTCAAG
GGCATCGACA ACGCCAGCTA CTACCGGCTG CTGCCGGAGC AGAAGCGCTA TTACATCAAC
GACACCGGCA CCGGAAACAC CGTCAACCTC ACGCATCCGC GCGTGATCCA GATGGTCAAT
GACAGCCTGC GCTACTGGGC CGGCGAGATG CACATCGACG GCTTCCGGTT CGATCTCGGC
ACCATCCTGG CGCGCGAGCA TTACGGTTTC GACGAACAGA GCGGCTTTTT GAAATCCGTG
ATGCAGGACC CGCTGCTCAG TTCGGTGAAG CTGATCGCCG AACCCTGGGA TTGCGGTCCC
GGCGGCTATC AGGTCGGCGG CTTCCCGCCG GGCTGGGCGG AATGGAACGA CAAGTTCCGC
GACACCGCGC GCGATTATTG GCGCGGCGAA GCCCCGGCTG CGGCGTTGGC GCCGCGGCTG
TCGGCCTCCG GTGACGTGTT CAACCGCCAG GGCCGGCGCG CCTGGGCGAG CGTGAACTTC
ATCACGGCGC ACGACGGCTT CACTCTCAAT GACTGGGCGA GCTACAACGA CAAGCACAAC
GATGCCAATG GCGAAGACAA TCGCGACGGC CACTCCGATA ACCGCTCGTG GAATTGCGGT
GCGGAAGGTC CGACCGACGA CGAGACCATC CTCAGCCTGA GAGAGCGTCA GAAGCGCAAC
ATGCTGGCGA CGCTGCTGCT CGCCCAAGGC ACGCCGATGC TGCTGGCCGG CGACGAGTTT
GGCCGCACCC AGAATGGCAA CAACAACGCC TACTGCCAGG ACAACGAGAT CTCCTGGGTG
CACTGGGACC ACGACGAGGC CGCGCAGCAT CTGCGCGCCT TCACCCAGCG GCTGCTGGAA
CTGCGCCGGG CCACGCCGAC GCTGCGGCGC AGCCGGTTCC TCACCGGACA ATACGACGAG
ACGCTCGACG TTCGCGACGT CACCTGGATC AACGCCAATG GCGGCGAGAT GCAGCAAGAG
CATTGGGACG ATTCCAACGT GAAATGCTTC GGCATGCTGC TCGACGGCCG CGCCCAGACC
ACCGGCATCC GCCGGCTGGG CGAAGAAGCC ACCGTGCTGC TCGTGCTGAA CGGCTTCGAC
GGCATGGTGG AGTTCACCCT GCCCGAGGTT CCACACGGCA CCAAATGGTC GCTGCTGATC
GACACCAACC TGCCCCACGG CGTGCCGGAT GAGGAGTTCG AATGCGGCGC GGCGTATCAG
GTGACGGCAC GCTCGGTGCT GCTGTTCAAG CTCGGCAAGT AA
|
|---|
| Protein sequence | MTDTTETLEL PPETKPAEPA AKPQAVPGYN VFNDTKAVRE GLPYPLGSCW DGHGTNFALF
SANATKVEVC LFDGDTERRI ELPEYTDEVF HGYIPDIGPG TFYGYRVYGP YEPENGHRFN
PNKLLLDPYA RAHAGLLTWD PAVFGYVMES GDDTTFDERD SARFVPKCVV VDPDFDWKGE
PGRKFVPWDQ AIIYETHVKG FTKLHPEVPE HLRGTYAGFG TKPVVDYISS LGVTAVELLP
IHTFVNDSYL LDKNLVNYWG YNTIGFFAPD PRYAADVPNS LREFKEMVAR LHDVGLAVIL
DVVYNHTAEG NELGPTLSFK GIDNASYYRL LPEQKRYYIN DTGTGNTVNL THPRVIQMVN
DSLRYWAGEM HIDGFRFDLG TILAREHYGF DEQSGFLKSV MQDPLLSSVK LIAEPWDCGP
GGYQVGGFPP GWAEWNDKFR DTARDYWRGE APAAALAPRL SASGDVFNRQ GRRAWASVNF
ITAHDGFTLN DWASYNDKHN DANGEDNRDG HSDNRSWNCG AEGPTDDETI LSLRERQKRN
MLATLLLAQG TPMLLAGDEF GRTQNGNNNA YCQDNEISWV HWDHDEAAQH LRAFTQRLLE
LRRATPTLRR SRFLTGQYDE TLDVRDVTWI NANGGEMQQE HWDDSNVKCF GMLLDGRAQT
TGIRRLGEEA TVLLVLNGFD GMVEFTLPEV PHGTKWSLLI DTNLPHGVPD EEFECGAAYQ
VTARSVLLFK LGK
|
|---|
| |