| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3725 |
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| Symbol | |
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| ID | 6411402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3986427 |
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| End bp | 3987254 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642713606 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001992700 |
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| Protein GI | 192292095 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.309942 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAAAC TGCAAGGCAA GGTGGCGCTG GTCACCGGAT CGGGCCGCGG CATCGGCCGC
GCCATCGCGC TGAAGCTCGC GTCCGAAGGC GCGCGCGTCG TCGTCAACGA TCTCGACGCC
GAGCCTGGCG ACGCGGTCGC CGCCGAGATC AAGGCGATGG GCAGCGACGC GATTGCGATC
AACGGCAGCG TTTCGGAAGC CGGCTTCGCC GATCGCTTCG TCGGTGCCGC GGTCGAGAAA
TTCGGCGGCC TCGACATCAT CGTCAACAAC GCCGGCTACA CTTGGGATTC GACGATCCAG
AAGATGACCG ACGAGCAATT CCAGGCGATG CTCGACGTGC ATCTGGTGGC GCCGTTCCGC
ATCCTGCGCG CTGCCGCCGA GCCGATCCGG ATCTTCGCCA AGAAGGAAGC CGAGGCCGGC
CAGGAAGTGT TCCGGAAAGT CGTCAACATC TCGTCGATCG CCGGGCTCTA CGGCAATGCC
GGCCAGGCCA GCTACTCGTC GGCCAAAGCC TCGCTGGTCG GGCTGACGCG CACGCTGTGC
AAGGAATGGG GACGCTACAA GGTCAACGTC AATTGCGTCG CGTTCGGACT GATCAACACC
CGCCTCACCC AGCCTATCGA AGCGCAGCAG AAGACCATCG ACGTGGCCGG TCGCGACATC
AAGGTCGGCG TGCAGCCGCA GATGCTGGAA GCGATGGCGC GGATGATCCC GCTCGGGCGC
GGCGGCACGC CGGAGGAAGC AGCGGACGCA GTGTATCTGT TCTGCAGCCC GGAATCCAAC
TACGTCAGCG GCCAGGTGCT GGTCTGCGGC GGCGGCCTGA TCCTGTAA
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| Protein sequence | MGKLQGKVAL VTGSGRGIGR AIALKLASEG ARVVVNDLDA EPGDAVAAEI KAMGSDAIAI
NGSVSEAGFA DRFVGAAVEK FGGLDIIVNN AGYTWDSTIQ KMTDEQFQAM LDVHLVAPFR
ILRAAAEPIR IFAKKEAEAG QEVFRKVVNI SSIAGLYGNA GQASYSSAKA SLVGLTRTLC
KEWGRYKVNV NCVAFGLINT RLTQPIEAQQ KTIDVAGRDI KVGVQPQMLE AMARMIPLGR
GGTPEEAADA VYLFCSPESN YVSGQVLVCG GGLIL
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