| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3699 |
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| Symbol | |
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| ID | 6411375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3955930 |
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| End bp | 3959490 |
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| Gene Length | 3561 bp |
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| Protein Length | 1186 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642713579 |
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| Product | TonB-dependent heme/hemoglobin receptor family protein |
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| Protein accession | YP_001992674 |
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| Protein GI | 192292069 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport
[COG3637] Opacity protein and related surface antigens |
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| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0724462 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTGG ATACAAAGTG CGTATGCTCT AACGGGCGAC TGGCCGTTCT GTTGATGGCG
GCGACGTTCT TGTCGACGGC CGCGACGGTC GAACAATCCT ACGCACAAGC TCCGCAACCA
TCACGCGCAG GCGCCGGTTC TCGCGAGCTC GACATCCAGG CTCAGCCGCT CGGGAGCGCG
CTGATCGCAT TCTCCCGTCA GTCGCGGCTC CAGATCTTCG TCGATCAAGC TCTGGTGGCG
GGAAAGTCCG CACCGGCGGT CCGCGGCGCG CTGACGCCGT CTGCTGCGCT CGATCGGCTT
CTGGCCGGGT CCGGGCTCTC CTATCGGTTC AAGCGTGGAG GCACTGTCAC GATCGTCGGT
CCGGTCAGCG CCAGCATGAA CCAGATGCCG GCATCCGATG GATCGCTGAT GCTCGATACG
ATCGACATCT CGGGTGGTCG CGGAACTCCG GCCGAGGTGC CGTACCGCAC GCCCGCGCCC
GTGACCCAGA TTACGCAGGA GAGCATCGAG CGCTTTCGGG GCAGCAGCCC GGCCGACATC
TTCCGCGGTA CGCCGGGTGT GATGTCAGGC GAAGCCAGGA ACGGCGGCGG TTCGATCGAC
GTCAATATCC GGGGCATGCA GGGCATGGGC CGTGTCGCCG TCACGGTTGA TGGCGCTGAG
AACGGACTGA CCGTCTATCA GGGCTATCAG GGCATCTCGA ACCGGACCTA CGTCGATCCT
GATCTCCTGG CCGGCGTCGA CATCACCAAG GGCGCGGACG TCTCGTCACG GGGCATAGCC
GGCACGGTGG CGATGCGCAC GGTCGGCGCC GACGATGTCG TGAAGGCGGG TGAAAAATGG
GGCGTGCTGG TGAAGAGCAG CTTCGGCACC AACACCGCCA ACCCGCGGCC GGGCGATCTC
GGTGGTTATA CCTGGCCGCG GCCCTATGTC AGCGATCCGC AGCCCTATCC GGTGCCGACG
GCGCAGGCTT CCGGCCTCGA CCGCCCCGGA CTGTTCACTC CGACCAGTGG CTCGTTCAGC
ACCGTCGCGG CGATCAAGGA GGCGAATTAC GATCTGCTGT GGGGCTACGC GTACCGGAAG
CAGGGCAACT ATTTCGCCGG AAAGAACGGG CCGGGCGCGG GCGTCCTCGA CACCGGGCCG
CAGCCGCTCT GCTATTCGAG TGGCTTCTGT TATTATCCGC CGAGCCCGAT CTCCTATGCG
CATGTCTACC AAAACACCGG TCTGACCAGC TATCGCGCCG GCGAGCAGGT TCTCAACACG
CAGCTCGAGA CCGAATCCTA TCTCGCCAAG GGCACCGTGC GATCCGACGA CGGCCAGAGT
CTGCAGGTTG GCTACAACGG CTATCGCAGC AAGGCTGGCG ACGTCATCGC GTCTTTGTTC
TCAAGCGCCC AAAACCAGGC CGTGCAACAG GTCCAGGAGG ACGTGACCAA GGTCGACACC
GGCACCGTCC GCTATCGTTG GAAGCCGGAG GACAACGGTC TCGTCGACCT CAAAGCCAAC
ATGTGGATGA CCAACCTGAC GTTGCTGACA CCGCCCCGGA CGAGCATCGC GACCAACGTC
AAGCCTGAGG ATTTCGGTTT TCCGTACAAC TACCTGCCGG GCAATCAAAC CACGATGGGC
GGCGGCGACC TCAGCAACAG GTCCCATCTG TCATTGGAGC GCTTCGGTTC GCTCGACGTC
GAGTACGGTG CGTCATACCT CCAGGAGGCG ACCAGGCCGA CGCCGTTTAC GAACGAGCTC
AATGCCGGCA TCCCGTCCCG TGAAGGCGCC AGGCAGGAGG TCGCCGGTTT CGGCAAAGTC
GCGTACAAGC CGGTCGATTG GCTCACGCTG AACGGCGGTC TCCGGTATTC GCATTACTGG
TCTCAGGATC GGAGCACGAT CACCAACGCC TCACAGGTGA ATCCGCAGCC GTCGCGTGAC
ACCGGCGGAT ACAGTCCGTC CGCCGGAATC GTGGTCGAGC CGATCAAGGA CGCACAGTTC
TACGTCAACT ACTCCAGCGC CCTGCGCATG CCGACCCTGT TCGAATCGGT TGCAGGCTAC
AGTCTGATCC CCAACGCTGG TCTGCTTCCC GAGCGCTCCA ACAATTGGGA GGCTGGGGTG
AACCTCTTCA GAGAGGGGGT GTTCGCGCCC GCCGACAAGG CGATGATGAA GTTCGGCTAC
TTCAACTGGA ATGTGTCGAA CTACGTCGCC CGGATGAGCA AGTCGTTTGT GGATCCGACC
TACGGCTACA CCTACTCGGC CCTTCAGGTT GTCAATATCG ATCGTGCGCG CTTCGAAGGA
CTCGAATGGT CTGGCCGCTA TCAGAGCGGC GGATTTACCG CAGAGGTCGC AGCGAATTAC
TATCTCAACG TCGAATATTG TCCGACTGCG GCCAATTGCG CCAATTCGAC TCTGTCCGGC
GACTATTCGG CCAATCAGGT GCCTCCGAAA TACTCGGCGA ACATCACGTT ATCGCAGAAG
CTGCTCGACG ATGATCTGAC GGTCGGTGGT CGTGCGAGTT ATATCGGGCC GCGCTCGATC
GGATACGGGG CGGTGCAGTA TGGCGCGGCC GCGATCATCG CGCCGATTAT CTGGCAGCCG
TATTGGCTGG TCGACGTGTT CGCCGAGTAT AAGCTCACCA AGGATATCAC GCTGCGTGCG
ACCGTCGAGA ACTTGACGGA TCAGTATTAT GTCGACCCGC TCAGTCTGGT TCAGCAGCCG
GGGCCGGGGC GCACGTTCCG CCTCGGAATG AGCGGGAAGT TCGGCGGCAG CGAGACGGTC
ACACCCGGAT CTCTGACGCG CCTGTTCGCG CCGAGCACAG CGGTTGCGGA CTGGAGCGGT
TTCCATGCCG GCGTCAACAC AGCCTACAAC TCCGCGAAAT TCGGTGGGGC CATGACCGCG
TTGGACGGAT CGGCCGACAG TCACGCGGCG AACGAAGCGC CAAATCAGCA GGTCGGCGCG
CTCTCGTTCG GCTTGCACGC AGGCTACGAC TATCAGTTCG CGAACCGGTT CATCGTCGGC
ATCGAGGCCG ATATCGCCAA GACTGAGATC GGTGCGCCCC AGGTGACCTT CGCGGCCGAA
GGCGTCGCCT GCAACTGCGC GAACAACCTG GCCAGGATGC GGCAGTTCGA AGCCGTGCAG
CAGAGCGAGA TCAAATGGCT CTCCACCGTG CGCGGACGGC TCGGCTACGC CGTCAACGAC
AGGTTGATGC TGTTTGCCAG TGGTGGTGTT GCCTTCATGA GGCAAGACGA ATCCCGGACG
CAGTACCGTG CCGTCAATTC CGGAAACTTC TCGTGGCCGA CGACGACCGT GGCGGCTTTC
ACCGAAGACA GCTCTCGTAC CCGAGTGGGA TATGTGATCG GTGGGGGCGG CGAATTCGCT
GTGGGCGGTG CGTGGTCGAT CAAGGCTGAG TATCTGCTGG CCCGGTTTAC CGGCGAGGAT
TTCACCTTCG CCGACGCAAG AGCAGGCGTA CTGCCAGGCA ATTTCGTGAC GCCGGCGACC
TACGCGACGA GCAACGGACG CAAGCTCAGC AGCAACGTGG ATATCCCCAT GGTCCGCGTC
GGAGTCAACT ATCGGTTTTA G
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| Protein sequence | MSLDTKCVCS NGRLAVLLMA ATFLSTAATV EQSYAQAPQP SRAGAGSREL DIQAQPLGSA
LIAFSRQSRL QIFVDQALVA GKSAPAVRGA LTPSAALDRL LAGSGLSYRF KRGGTVTIVG
PVSASMNQMP ASDGSLMLDT IDISGGRGTP AEVPYRTPAP VTQITQESIE RFRGSSPADI
FRGTPGVMSG EARNGGGSID VNIRGMQGMG RVAVTVDGAE NGLTVYQGYQ GISNRTYVDP
DLLAGVDITK GADVSSRGIA GTVAMRTVGA DDVVKAGEKW GVLVKSSFGT NTANPRPGDL
GGYTWPRPYV SDPQPYPVPT AQASGLDRPG LFTPTSGSFS TVAAIKEANY DLLWGYAYRK
QGNYFAGKNG PGAGVLDTGP QPLCYSSGFC YYPPSPISYA HVYQNTGLTS YRAGEQVLNT
QLETESYLAK GTVRSDDGQS LQVGYNGYRS KAGDVIASLF SSAQNQAVQQ VQEDVTKVDT
GTVRYRWKPE DNGLVDLKAN MWMTNLTLLT PPRTSIATNV KPEDFGFPYN YLPGNQTTMG
GGDLSNRSHL SLERFGSLDV EYGASYLQEA TRPTPFTNEL NAGIPSREGA RQEVAGFGKV
AYKPVDWLTL NGGLRYSHYW SQDRSTITNA SQVNPQPSRD TGGYSPSAGI VVEPIKDAQF
YVNYSSALRM PTLFESVAGY SLIPNAGLLP ERSNNWEAGV NLFREGVFAP ADKAMMKFGY
FNWNVSNYVA RMSKSFVDPT YGYTYSALQV VNIDRARFEG LEWSGRYQSG GFTAEVAANY
YLNVEYCPTA ANCANSTLSG DYSANQVPPK YSANITLSQK LLDDDLTVGG RASYIGPRSI
GYGAVQYGAA AIIAPIIWQP YWLVDVFAEY KLTKDITLRA TVENLTDQYY VDPLSLVQQP
GPGRTFRLGM SGKFGGSETV TPGSLTRLFA PSTAVADWSG FHAGVNTAYN SAKFGGAMTA
LDGSADSHAA NEAPNQQVGA LSFGLHAGYD YQFANRFIVG IEADIAKTEI GAPQVTFAAE
GVACNCANNL ARMRQFEAVQ QSEIKWLSTV RGRLGYAVND RLMLFASGGV AFMRQDESRT
QYRAVNSGNF SWPTTTVAAF TEDSSRTRVG YVIGGGGEFA VGGAWSIKAE YLLARFTGED
FTFADARAGV LPGNFVTPAT YATSNGRKLS SNVDIPMVRV GVNYRF
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