Gene Rpal_3642 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3642 
Symbol 
ID6411318 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp3902350 
End bp3903369 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content64% 
IMG OID642713522 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_001992617 
Protein GI192292012 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.236787 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACGATCC AGAAAAATTG GCAGGAATTG ATTCGGCCGA ACAAGCTCCA GGTCACCCCC 
GGGAGCGATG CCACCCGGTT CGCGACGCTG GTCGCCGAGC CGCTCGAGCG CGGCTTCGGT 
CAGACGCTCG GCAACGCGCT GCGTCGCGTG CTGTTGTCGT CGCTGCAGGG CGCGGCGGTG 
CAGTCGGTCC ACATCGACGG CGTTCTGCAC GAGTTCTCCT CGATCGCCGG CGTGCGCGAG 
GACGTCACCG ACATCGTGCT GAACATCAAG GACATCTCGC TGAAGATGCA GGGCGAAGGC 
CCGAAGCGGA TGGTCGTGAA GAAGCAGGGT CCGGGTGCCG TCACCGCTGG TGACATCCAG 
ACCGTCGGCG ACATCGTCGT GCTGAACCCG GATCTGCAGC TCTGCACGCT GGACGACGGC 
GCCGAGATCC GCATGGAGTT CACCGTCAAC ACCGGCAAGG GCTACGTCGC CGCCGAGCGC 
AACCGTCCCG AGGACGCGCC GATCGGCCTG ATCCCGGTCG ACAGCCTGTA CTCGCCGGTC 
CGCAAGGTGT CGTACAAGGT CGAGAACACC CGCGAGGGCC AGATCCTCGA CTACGACAAG 
CTCACCATGA CGGTCGAGAC CAACGGCGCG ATCTCGCCGG AAGACGCGGT GGCGTTCGCC 
GCCCGCATCC TCCAGGATCA GCTCAACGTC TTCGTCAACT TCGAAGAGCC GCGCAAGGAA 
GTCACCCAGG AGATCATCCC GGATCTGGCC TTCAACCCGG CCTTCCTCAA GAAGGTGGAC 
GAGCTCGAGC TGTCGGTGCG TTCGGCGAAC TGCCTGAAGA ACGACAACAT CGTCTACATT 
GGCGACCTGG TGCAGAAGTC GGAAGCGGAA ATGCTCCGCA CCCCGAACTT CGGGCGCAAG 
TCGCTGAACG AGATCAAGGA AGTGCTGGCG CAGATGGGCC TGCATCTCGG CATGGAAGTG 
CCGGGCTGGC CGCCGGAGAA CATCGACGAG CTCGCCAAGC GCTTCGAAGA TCACTACTAA
 
Protein sequence
MTIQKNWQEL IRPNKLQVTP GSDATRFATL VAEPLERGFG QTLGNALRRV LLSSLQGAAV 
QSVHIDGVLH EFSSIAGVRE DVTDIVLNIK DISLKMQGEG PKRMVVKKQG PGAVTAGDIQ 
TVGDIVVLNP DLQLCTLDDG AEIRMEFTVN TGKGYVAAER NRPEDAPIGL IPVDSLYSPV 
RKVSYKVENT REGQILDYDK LTMTVETNGA ISPEDAVAFA ARILQDQLNV FVNFEEPRKE 
VTQEIIPDLA FNPAFLKKVD ELELSVRSAN CLKNDNIVYI GDLVQKSEAE MLRTPNFGRK 
SLNEIKEVLA QMGLHLGMEV PGWPPENIDE LAKRFEDHY