| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3640 |
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| Symbol | |
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| ID | 6411316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3900696 |
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| End bp | 3901490 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642713520 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001992615 |
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| Protein GI | 192292010 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0734919 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATCG ATCTGTCCGG CAAGACCGCG CTCGTCACCG GCTCGACCGC CGGCATCGGC
CATGCCATCG CCAAGGGGCT CGCCGCGACC GGCGCCAATG TGGTGATCAA CGGCCGCGGT
CAGGCCAAGG TCGACGCGGC AGTCGCCGCA GTTTCGAAAT TCGCCAAGGG CGGCAAAGTG
ACGGGCGTTA CGGCCGACGT CTCGACCGCG GACGGCTGCG CCAAACTGGT CGCCGCTCAG
CCGGACGTCG ACATCCTGAT CAACAATACC GGCATCTTCG AGCCGAAGCC GTTCTTCGAG
ATTCCGGATG AAGACTGGCA GCGCTTCTTC GACGTCAACG TGATGAGCGG CGTGCGGCTG
TCGCGCGCCT ACATGCCGGC GATGCTGGAG CGCAACTGGG GCCGCATCGT CTTCATCGCC
TCGGAATCTG CGCTGATGAT TCCGAAGGAG ATGATCCACT ACGGCATGAC CAAGACCGCG
CAGCTCTCGG TCTCGCGCGG CCTCGCCGAA CTCACCCGCG GCACGGCGGT GACGGTGAAC
GCGGTGATGC CCGGTCCGAC CATGAGCGAA GGCGTGCAAA CCTTCGTGGC CGATCTTGCC
AAGCAGAACG GCCAATCGGA GAGCGAAGCC GCCGCCAACT TCATCAAGCA GCATCGCCCC
GGTTCGCTGA TCCAGCGCTT CGCCACCGTC GAAGAGATCG CCAACATGGT GGTCTATGTC
AGCTCCAAGG AAGCCGCCGC CACTAACGGC GCCGCGCTAC GGGCCGAAGG CGGCCTGCTG
CAGACAATCG CGTAG
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| Protein sequence | MNIDLSGKTA LVTGSTAGIG HAIAKGLAAT GANVVINGRG QAKVDAAVAA VSKFAKGGKV
TGVTADVSTA DGCAKLVAAQ PDVDILINNT GIFEPKPFFE IPDEDWQRFF DVNVMSGVRL
SRAYMPAMLE RNWGRIVFIA SESALMIPKE MIHYGMTKTA QLSVSRGLAE LTRGTAVTVN
AVMPGPTMSE GVQTFVADLA KQNGQSESEA AANFIKQHRP GSLIQRFATV EEIANMVVYV
SSKEAAATNG AALRAEGGLL QTIA
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