| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3637 |
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| Symbol | |
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| ID | 6411313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3897476 |
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| End bp | 3898867 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642713517 |
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| Product | protease Do |
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| Protein accession | YP_001992612 |
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| Protein GI | 192292007 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.25969 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCCGA TCCGCACGTT CGCCGTCCTC TGTGTGTCAC TCGCCCTCAC CACGCCGCTC
GCGGCGCAGG ACCGGCGGGT GCCGTCGTCG CCGGCGGAGC TGAAGCTGTC CTACGCGCCG
ATTGTGCAGC ATGTGCAGCC GGCGGTCGTG AACGTCTATG CCGCCAAGGT GGTGCAGAAC
CGAAATCCGC TGCTGGAAGA TCCGATCTTC CGCCGGTTCT TCGGCGTGCC CGGCCAGCCG
GAGCAGATCC AGCGCTCGCT CGGCTCGGGT GTGATGGTCG ATGCCTCGGG CCTCGTCGTC
ACCAACAATC ACGTCATCGA GGGCGCCGAT CAGGTCAAGG TCGCGCTCGC CGACAAGCGC
GAGTTCGAAG CCGAGATCGT GCTGAAGGAC AGCCGCACCG ATCTGGCGGT GCTGCGGCTC
AAGGACACCA GCGAGAAATT CCCCACGCTC GACTTCGCCA ACTCCGACGA CCTGCTGGTC
GGCGACGTGG TGCTGGCGAT CGGCAATCCG TTCGGCGTCG GTCAGACGGT GACGCATGGC
ATCGTCTCGG CGCTGGCGCG CACTCAGGTC GGCATTACCG ACTATCAGTT CTTCATTCAG
ACCGACGCCG CGATCAACCC GGGCAATTCC GGCGGCGCGC TGGTCGATGT CTCGGGCAAG
CTGGTTGGTA TCAACACCGC GATCTTCTCG CGCTCGGGCG GCTCGCAGGG GATCGGCTTC
GCGATCCCCG CCAACATGGT GCGCGTCGTG GTCGCCTCGG CCAAGAGCGG CGGCAAGGCC
GTGAAGCGGC CGTGGCTCGG CGCGCGGCTG CAGGCGGTGA GCCCGGAGAT CGCCGAGACC
CTGGGGCTGA AGCGGCCGGG CGGTGCGCTG GTCGCCAGCG TTACCAAGGG CAGCCCGGCG
GAGCGGGCAG GGCTGAAATT GTCCGACCTG ATCGTGTCGA TCGACGGCTT TGCGATCGAT
GATCCCAACG CGTTCGATTA TCGGTTTGCG ACGCGTCCGC TTGGCGGTGC CGCGCAGCTC
GAAGTGCAGC GCAGCGGCAA GGCGGTGAAG CTGTCGATCC CGCTCGAAAC CGCACCGGAC
TCCGGCCGCG ACGAGCTGGT GATCACCTCG CGCTCGCCGT TCCAGGGTGC GAAGATCGCC
AATATTTCCC CGGCGATCGC CGACGAAATG CGGCTCGATC CGAGCGTCGA AGGCGTCGTG
GTCACCGATC TTCCCGACGA CAGCACTGCG GCGAATGTCG GCTTCCAGAA GGGCGACATC
ATCGTCGCCG TCAACAACAC CCGGATCGGC AAGACCAGCG ACCTCGAACG CGTAGCCGGC
CAAACGGCGC GGCTGTGGCG CATCATGCTG GTCCGCGGCG GCCAGCAGAT CCAAGTCACC
TTGGGCGGGT AG
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| Protein sequence | MNPIRTFAVL CVSLALTTPL AAQDRRVPSS PAELKLSYAP IVQHVQPAVV NVYAAKVVQN
RNPLLEDPIF RRFFGVPGQP EQIQRSLGSG VMVDASGLVV TNNHVIEGAD QVKVALADKR
EFEAEIVLKD SRTDLAVLRL KDTSEKFPTL DFANSDDLLV GDVVLAIGNP FGVGQTVTHG
IVSALARTQV GITDYQFFIQ TDAAINPGNS GGALVDVSGK LVGINTAIFS RSGGSQGIGF
AIPANMVRVV VASAKSGGKA VKRPWLGARL QAVSPEIAET LGLKRPGGAL VASVTKGSPA
ERAGLKLSDL IVSIDGFAID DPNAFDYRFA TRPLGGAAQL EVQRSGKAVK LSIPLETAPD
SGRDELVITS RSPFQGAKIA NISPAIADEM RLDPSVEGVV VTDLPDDSTA ANVGFQKGDI
IVAVNNTRIG KTSDLERVAG QTARLWRIML VRGGQQIQVT LGG
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