| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3635 |
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| Symbol | |
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| ID | 6411311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3893648 |
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| End bp | 3895618 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642713515 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001992610 |
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| Protein GI | 192292005 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCGCG CCGACAGCAG CTTCAAGGCG ATCGCCCTCG CCAAGGCCCA GGCCCGCACG
GCGCTGCGCA ATGTCCGGCT CACCTTGATC TCCAACATCG CGATCGCGCT GTCGCTGGCG
GCGCTGCTGT ATCGCGAGAA TGGCGAGACG CCGATCCTGT GGTGGCTCGG CGTCGCAATC
CCGCTGGCGC TGCTCCGCGC CTGGTGGGTA TCGCGATTGG CAGCGAGCGG GGCAGTCGAC
ACCGCGCCGT ATCAGGTGCT CCGCCACCTG ACGCTGCTGG CGCTCGCCAG CGGTCTGTTG
TGGGGCTTTG TGCCCGCCGC GGTCGGCGTA TTCTCCGCCC AGCATGGCCT CGACTACATC
ACCTTCATCA TGATCGGCGC CACCACTGGC GCGATCATTC AGGGAGCCGC CTATTCCCCC
GTCTCGCTCG CCTTTGCGAC GCCGGTGATG GCCGCGACGC TGTTCCGGAT CATGATGTCC
GGCGACAGCT CCGACTACAT CGTCGCGCTC GACGGTGTGT TCCTCACCTT CATGCTGTTT
CGCGCCGCGA TCGGTGGCGA GCGTGAGTTC ACCGCCAGCC AGATGACCGC GCTGGAGGCG
ACCGATCTCG CCAATTCGCT GGCGAGCGCC AACAACGAAG TGCTGAATTC GAACCGCGCG
CTGGAGCAGA TCGCGCGGGC CGATCCGCTC ACCGGGCTCG CCAACCGCAG TCACTTCCGC
GACGCTGCGG CGGACGCGTG CCGCTCCGGG CAGGGCGTCG CCTTCGTGCT GTTCGACGTC
GACAACTTCA AGATCGTCAA CGACACCCGC GGCCACGACG CCGGCGACCG CGTGATCGCG
GCGGTCGCCG ATCTGCTGCG CTCGTCGTGC GGGCCGCACG ATCTGCCGGT GCGGCTCGGC
GGCGACGAGT TCATCGTGGT GCTGAAGGGC GATGACGTCG CGGCGCGCGC GCTGTCTCTG
GCGCGGCGGC TCAGCGGCGC GCTGACGCGG CCGCTGCAGG TCTTGGGCCA GCCGCTGGCG
ATCACTTGCT CGATCGGCAT CGCGGCGCAT CCGGGTGGCC CGATCGATGT CGAGGACGTG
TTCTCGCGCG CCGACGCCGC GCTGTATCGC GCCAAGGATG ACGGCCGCGC CTGCATCCGG
CTGTTCGACG CGCGGATGCA GGAGGAGTTT CTGCTGCAGC GCTGCATCGA CGGCGACCTG
CCGGGCGCGC TGGCGCGCGG CGAACTGCAT CTCGAGTTCC AGCCGCAGGT GGTACTCGCC
ACCGGCCAAG TGGTCGGCTT CGAGGCGCTG CTGCGCTGGC GCCATCCGAC CGCCGGGCTG
ATTCCGCCAC CGGACATCAT TCACGCCGCG ATCCGGCTGC AGCTGTCGGC GCGGCTGCTT
TCGTTCATCG GCGACGCGGC ATGCGACTTC CTGCGCGCGC TCGACGCCAG CGGCGCGCCG
CCGGTCAATG TCGCGGTCAA CGTCTCGCCA CGCGAACTGA CGCTGCATTC GCCGGCCAAG
ATCCTGATGG ATCTGACGCA GCGTCACGGC ATCGATCCGC GGCGGGTCGA GATCGAGATC
ACCGAAGAAG CCCTGTTCGA TCCCAAGCAG TGCGCCCGCG AATTGCAGCG CATCGAGCAT
TACGGCTTTG GGCTGGCGAT CGACGATTTC GGCGTCGGCC ATTCGTCGAT CTCGAATTTG
ATGAGCATCG CCCTCGACAC CATCAAGATC GACCGCTCGT TCGTGCACGG CGTCAGCGCC
AACCGCCAGA ACCAGCAGCT GATCGCCGCG ATCACCGCGG TGGCGCGGCC GCTTGGCCAT
CGCATCATCG CCGAGGGCGT CGAGAGCCAG GGCGAGGCCG AGACGCTGCG GATGCTCGGC
TGCTCCTACG GCCAGGGCTG GCTGTACGGC CGCCCGATGC GCGCCGCCGA CGCGGTGGCG
TGGCTTGCCG GTCTCGATGA GGAGCGACGC CGCGAGCGGC AGCTCGCCTA G
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| Protein sequence | MTRADSSFKA IALAKAQART ALRNVRLTLI SNIAIALSLA ALLYRENGET PILWWLGVAI
PLALLRAWWV SRLAASGAVD TAPYQVLRHL TLLALASGLL WGFVPAAVGV FSAQHGLDYI
TFIMIGATTG AIIQGAAYSP VSLAFATPVM AATLFRIMMS GDSSDYIVAL DGVFLTFMLF
RAAIGGEREF TASQMTALEA TDLANSLASA NNEVLNSNRA LEQIARADPL TGLANRSHFR
DAAADACRSG QGVAFVLFDV DNFKIVNDTR GHDAGDRVIA AVADLLRSSC GPHDLPVRLG
GDEFIVVLKG DDVAARALSL ARRLSGALTR PLQVLGQPLA ITCSIGIAAH PGGPIDVEDV
FSRADAALYR AKDDGRACIR LFDARMQEEF LLQRCIDGDL PGALARGELH LEFQPQVVLA
TGQVVGFEAL LRWRHPTAGL IPPPDIIHAA IRLQLSARLL SFIGDAACDF LRALDASGAP
PVNVAVNVSP RELTLHSPAK ILMDLTQRHG IDPRRVEIEI TEEALFDPKQ CARELQRIEH
YGFGLAIDDF GVGHSSISNL MSIALDTIKI DRSFVHGVSA NRQNQQLIAA ITAVARPLGH
RIIAEGVESQ GEAETLRMLG CSYGQGWLYG RPMRAADAVA WLAGLDEERR RERQLA
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