| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3617 |
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| Symbol | |
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| ID | 6411293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3873388 |
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| End bp | 3874245 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642713497 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_001992592 |
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| Protein GI | 192291987 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0955775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACTCT TGATTTTTGG GTTGGGTTAT TCGGCCAACT ACATCGCACA GCATTTGCAG
GGTGCCGGGA TCGAGGTGAC TGCGACCGTC AGAACAAGCG CCAAGGCCGA AGAGTTGGTC
CGGCGCGGGA TCACCGCACG GGTGTTTTCA TCCTCTTCTA TCGATCCACT CATCGCTGAT
GATATCAAGT TGAGCGACGC CGTTCTGTCG TCGATCCCTC CGAATGAATC AGGCGATCCG
GTTCTCGCGT CCTTCCTCGG CTCGATTACC AGTGATTCCA GGCCGCGGTG GATCGGCTAT
CTTTCGACGA TCGGTGTGTA CGGTGACCAC CTCGGCAATT GGATCGACGA AACAACGCCT
GCGAAGTCGG AAAAACCCCG CTCGCAGCTC CGGATCGCCG CCGAGCAGCG CTGGCTGGCG
TTAGACGCGC ATGTTTTTCG TCTATCAGGG ATCTACGGCC CGGGCCGAAA CCAACTGGAG
AAGCTCGCAT CCGGAACGGC GACGCGTATC ATCAAGCCCG GCCAAGTCTT CAATCGAATT
CACGTTGCCG ATATCGCCGC GGTGGTCGCT GCGTCACTGT CGAGACCGCG GGCCGGCGCC
ATTTACAATG TGACCGACAA TGAGCCGGCA CCGCCGCAGC AGGTCGTCGA ATTCGCCGCT
GAACTCTGCG GACGAACACC GCCTCCTGAA GTTGCTTTCG ATGACGCCGA GCTTTCCCCG
ATGGCGCGCA GCTTCTATCT GGAGAATTGC CGGGTCCGTA ACGATCTGAT CCGCACGGAA
TTGGGGGTTA CGTTAGCCTA TCCATCCTAT CGGGAAGGAC TCTCGGCCTT GCGAGCGCTC
GGCGAGGGGC CAGCCTAA
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| Protein sequence | MRLLIFGLGY SANYIAQHLQ GAGIEVTATV RTSAKAEELV RRGITARVFS SSSIDPLIAD
DIKLSDAVLS SIPPNESGDP VLASFLGSIT SDSRPRWIGY LSTIGVYGDH LGNWIDETTP
AKSEKPRSQL RIAAEQRWLA LDAHVFRLSG IYGPGRNQLE KLASGTATRI IKPGQVFNRI
HVADIAAVVA ASLSRPRAGA IYNVTDNEPA PPQQVVEFAA ELCGRTPPPE VAFDDAELSP
MARSFYLENC RVRNDLIRTE LGVTLAYPSY REGLSALRAL GEGPA
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