| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3580 |
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| Symbol | |
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| ID | 6411255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3828305 |
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| End bp | 3830926 |
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| Gene Length | 2622 bp |
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| Protein Length | 873 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642713459 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001992555 |
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| Protein GI | 192291950 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCGAC ACACCAGTTC CCTTGACGAT CAGTCGCTCT GGCGCATCGC GCTCGACTAC
GCGCGGGATG CCGCCGTCAT TATCGATGAT GGTGGTCACA TCTGCTACGT CAACCAAGCT
GCAGAGCGGA TTTGGGGGAT CGGTCGCGCA GACCTCGTCG GCAGCCACTC CGACTGTCTC
GGTGTAAACG CAATCCAGCC AGAGCCTGTG GCTGGCTCGC ATCTCACAAA CGCTGCATCC
GACCTCCCTC TTGCGATCGA CATCACGAGC CGCGACAACC GCTCGATCAC GGCGGAACTG
ACGCGATCGA CGATCAGGGC CGACAGCCTC AACTACACGC TGCTCACGGT GCGCGATGTC
ACACCCGAGC TGGAGCGCCG CAAAGGGATC GAACTGCTCA CATCGATCGC GGATCGCACC
ACGCGCGCAG TGCTCGTCAC GGATCCCGAG CTGAAACTGC TCTACACCAA CGCGGCCTTC
ACAAGCCTGT TCGGATACAG CGCCGAGGAT GCCAAAGGGC AAAACATCAT CGACCTGCTC
TCCGGCCGTC ATACTAATCG CCGCACGATC GCCGGCCTGA AACGATGGAT CGCCGATGCC
GAAGGCGGCG AAGAAGAGAT CCTGGTTTAC GACCAGAACG GCGACGAGAT CTGGATCTCA
GCGGACGTGA AAGCGCTCCG CAACGCACAA GGCCGGATCA CACAGGTCTT CGCGCTGCTG
ACCGACATTT CGGAGACCCG GCAACTGCGC ATGCTGCAGC AAGTGACGCT GGGGGCGCTC
GCCGACGAGA TTCCGATCAC CGACGTCGCC GACCGGATGT GCCGGTTCGT CGAGAAGATC
GCGCCCGACG TGGTATCCAC GATCCTGCAC GTCGACGCCC AGGGCCTCTT GCACCCGCTC
GGTGGCCCGA ACCTGCCCGA CGATTACTCC CGCGCGCTCG ACGGCGTCTC GATCGGCCCG
ATGGTCGGGT CCTGCGGCGC CGCGGCGTAT TTCGGCAGAC CGGTGCTAGC ACTCGACATC
GAAACCGACC CGCGCTGGCA ACCATTCAAG AAACGGCCGC TGGAGATCGG GCTGCGTGCC
TGCTGGTCCT CGCCGATCAA GGCCAAGGAC GGCCGCGTGA TCGGCACTTT CGCGTTCTAT
TTCCGCGCGT GCCGCCCACC GAGCCGTTGG CATCACCGCA TCGTCGATGC CTGCCTGTAT
CTCGGTGCGC TCGCGATCGA ACGGATGGAA TCGCGCGCCC AGATCGCAAG GCTGGCTTAT
TTCGACATGC TGACGGGCCT GCCAAACCGG GCGCGGCTGC GCGATCTGAT CGCGGACGCG
ACGGCAGCCT GCCCACACGG CCGCACCGTT GCGCTGGCGT TTCTCGACGT CGACAATTTC
AAGGACATCA ACGACACGCT GGGCCATGCC GCGGGCGACG AATTCCTGGT CGAGTTCGCC
CGAAGGCTGC GGGACCAAGT CCAGCCGGGC GACGTGGTCG GACGACTCGG TGGTGATGAA
TTCGTCGTCG TTCTACCGAA CCGCGAGCCG GCAGAAATCG AACCAGTGGT GGCGCGGATC
AACGAGGCGC TGATGCTGCC ATTCGCGCTG TGCAACAGCC AGGTGCCGAT GTCGGCCAGC
ATCGGCGTCA GCCTGTATCC CGACAACGCC ACCGACATCG ACAGCCTGAT CAACCAGGCC
GACACCGCGA TGTATCGCGC CAAGCGTTCG GGCCGCTCGA CCTACCGGCT GTTCAACTGC
GACATGCATG GCGCAGCCGA GCAGCGGATG GCCTATGCGG CGGCGCTGCG CTCGGCGCTG
GCGAATAACC GCCTTGGATT GCACTACCAG CCGCAGATCC GTACCAGCGA CGGCGCGCTG
CACGGCGTCG AAGCCATGGC CCGCTGGCAC GATCCGGTGC TCGGCCCGGT GCCGCCGACG
AAGTTCATTC CGCTCGCCGA GGAGTGCGGT CTGATCGATC AGATCGCCTG CTGGTCGATC
CGCGAGGCCT GCCGGCAGAT GCGCGTATGG CGCGACCAGG GGCTCGAGGT GCCGAGTGTC
TCCGTCAATC TGTCGCCGAT CAACTTCGAG AACGCCGCAC TGCCGACGCT GGTCGCCGAC
ACGCTCGCGA CCTATCACCT GCCGCCCGAA GCGCTGATGC TCGAGGTCAC CGAAGGCGTC
GCTCAAGACA ATCGTTCGGC CGCGCACGAT ACGATGGCTG CGCTGCGCCG GATCGGAGTC
GGACTGTCAC TCGACGATTT CGGCACCGGC TATTCCAATC TCAACCGATT GGCGCAATTG
CCGATCCGCG AGCTGAAGAT CGATCGCGGC TTCATGAGCG AACTCGAAAC CAGCCCCACC
GCCCGGGCCG TCGTCACCAC CGTGGTGCGC GTCGGCCAAA GCCTCGCCCT CAGCGTCGTC
GCGGAGGGCG TCGAGACCAC CGCTCAATTC CAGCTGCTGA GCGATCTCGG CTGCGACGTC
GCGCAGGGCT TCCTGTATGC GCCGGCGCTG GCACCGGCTG CGTTCGAGCA CTGGCTGCTC
GGCTACAGCG CCTCCCGCGC CGGCACCATG ATGGAGCGCA TCGAGCCCAC CACGGCGGAC
CATCGGCCGG CTCCCCGCAC TGCCACGCGG CGGCGGCACT AA
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| Protein sequence | MRRHTSSLDD QSLWRIALDY ARDAAVIIDD GGHICYVNQA AERIWGIGRA DLVGSHSDCL
GVNAIQPEPV AGSHLTNAAS DLPLAIDITS RDNRSITAEL TRSTIRADSL NYTLLTVRDV
TPELERRKGI ELLTSIADRT TRAVLVTDPE LKLLYTNAAF TSLFGYSAED AKGQNIIDLL
SGRHTNRRTI AGLKRWIADA EGGEEEILVY DQNGDEIWIS ADVKALRNAQ GRITQVFALL
TDISETRQLR MLQQVTLGAL ADEIPITDVA DRMCRFVEKI APDVVSTILH VDAQGLLHPL
GGPNLPDDYS RALDGVSIGP MVGSCGAAAY FGRPVLALDI ETDPRWQPFK KRPLEIGLRA
CWSSPIKAKD GRVIGTFAFY FRACRPPSRW HHRIVDACLY LGALAIERME SRAQIARLAY
FDMLTGLPNR ARLRDLIADA TAACPHGRTV ALAFLDVDNF KDINDTLGHA AGDEFLVEFA
RRLRDQVQPG DVVGRLGGDE FVVVLPNREP AEIEPVVARI NEALMLPFAL CNSQVPMSAS
IGVSLYPDNA TDIDSLINQA DTAMYRAKRS GRSTYRLFNC DMHGAAEQRM AYAAALRSAL
ANNRLGLHYQ PQIRTSDGAL HGVEAMARWH DPVLGPVPPT KFIPLAEECG LIDQIACWSI
REACRQMRVW RDQGLEVPSV SVNLSPINFE NAALPTLVAD TLATYHLPPE ALMLEVTEGV
AQDNRSAAHD TMAALRRIGV GLSLDDFGTG YSNLNRLAQL PIRELKIDRG FMSELETSPT
ARAVVTTVVR VGQSLALSVV AEGVETTAQF QLLSDLGCDV AQGFLYAPAL APAAFEHWLL
GYSASRAGTM MERIEPTTAD HRPAPRTATR RRH
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