| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3562 |
|---|
| Symbol | |
|---|
| ID | 6411236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3813398 |
|---|
| End bp | 3814225 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642713440 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001992537 |
|---|
| Protein GI | 192291932 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.252373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCG GAATCACAGT TCTGCTGGCG CTGTGCCTCG TCTCGGCCGT CGCTTACTTC
ACCGCCTCGA AATGGGCGAT CCGGCACCAG ACGCTGACGT TCTACGATGC TTCGCGTCAG
CGGCCGGTCG AGATCGACAT CGCAGTTCGC CGTGACAAGG AGATGCAGGC CGAAGGCGGC
CTCGCTGAGC TCCCGGTCGC TGTGCTCAAT CACGGCAACA CCGTGAAGTT CACCGAGTAC
TCGTTCCTCG CCAATCTGTT CGCCGCGCGC GGCTATCTGG CGATCAGTAT TCAGCACGAT
CTGCCGACTG ACGGGCCGCT GGTGACCAAA GTCGGTGAGC CTTACGTCGG CCGGCTGCCG
GTCTATGAAA AGGGCGTCGC CAATATCGAC TTCGCCGTCG CGCAGCTGAG GACTATTCTG
CCGAATGCCG ACTATCATCA TCTCACCATG GTCGGGCATT CCAACGGCGG CGACATTTCG
ATGTACTACG CCCATCTGCA TCCCGAGCTG ATCCGGCGGG TGGTGACGCT GGATAATCTG
CGGGTGCCGT TCATGATCGA CGGCAAGTTC AAGACGCTGA CGTTCCGCTC CGAAGACCCC
GTATTCAAGA CCGATCCCGG CGTGGTGCCG GCGCGGGAGG TCTGCGACAA AGCGGGCATC
ACGGTGGTCA ACACCCAGTT CCAGCACACC GAGATGAGCG ATCGCGGGCC CACGAGCGTC
AAGAATGCGA TTGCGGAGTC GCTCGACCGC TTCCTCGACG ATGGCACCGC ATCGATCAAG
CCGAAGCCGG TGCCGCGCGG CCCGAGCGCC GTAGCCTCGG CCAAATAG
|
|---|
| Protein sequence | MTRGITVLLA LCLVSAVAYF TASKWAIRHQ TLTFYDASRQ RPVEIDIAVR RDKEMQAEGG
LAELPVAVLN HGNTVKFTEY SFLANLFAAR GYLAISIQHD LPTDGPLVTK VGEPYVGRLP
VYEKGVANID FAVAQLRTIL PNADYHHLTM VGHSNGGDIS MYYAHLHPEL IRRVVTLDNL
RVPFMIDGKF KTLTFRSEDP VFKTDPGVVP AREVCDKAGI TVVNTQFQHT EMSDRGPTSV
KNAIAESLDR FLDDGTASIK PKPVPRGPSA VASAK
|
|---|
| |