Gene Rpal_3549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3549 
Symbol 
ID6411223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp3798454 
End bp3798882 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content62% 
IMG OID642713427 
Producthistidine triad (HIT) protein 
Protein accessionYP_001992524 
Protein GI192291919 
COG category[F] Nucleotide transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only 
COG ID[COG0537] Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.276085 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGCTT ACGATCCCGA GAATATTTTC GCCAAGATCC TGCGCGGCGA AATCCCTTGT 
CACAAAATCT ATGAAGACGA TCACGTCTTC GCCTTTCTCG ACATCATGCC GCGTTCGACC 
GGCCACACGC TGGTGATCCC GAAAGCGCCG GCGCGCAACA TTCTCGACAT CACGCCCGAG 
GATTTCGCCC ATGTGGCGCG CGGCGCGCAC AAGATCGCGC ACGCGGCGAT GAAGGCGTTC 
AAAGCCGACG GCATCGTGGT GCAGCAGTTC AGCGAACCGG CCGCCGGCCA GGTCGTCTAT 
CATCTGCACA TGCACGTGAT GCCGCGCCAC GAAGGGGTGC CGCTACTGCC GCCGGCATCG 
CGCAAGGAAG AGCCCGCGGT GCTCGAACAA CATGCCGCGC AACTGAAGGC GGCGCTGGCG 
CAGAGCTGA
 
Protein sequence
MTAYDPENIF AKILRGEIPC HKIYEDDHVF AFLDIMPRST GHTLVIPKAP ARNILDITPE 
DFAHVARGAH KIAHAAMKAF KADGIVVQQF SEPAAGQVVY HLHMHVMPRH EGVPLLPPAS 
RKEEPAVLEQ HAAQLKAALA QS