| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3544 |
|---|
| Symbol | |
|---|
| ID | 6411218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3793292 |
|---|
| End bp | 3794587 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642713422 |
|---|
| Product | DNA polymerase IV |
|---|
| Protein accession | YP_001992519 |
|---|
| Protein GI | 192291914 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGGCG ACGACCCGGG CCGACGGACG ACACCCGGCT TCTGCCGGGA CTGCCTCGCC
GACCAGCGCG CCGAGGCGCG GCGCTGCGCG GCCTGCGGCT CGCCGCGCCT GCTGCGGCAC
CGGTCGCTCG GGACTCTGTC GCTCGCCCAT ATCGACTGTG ACGCGTTCTA TGCGACGGTC
GAGAAGCGCG ACAATCCGGC GCTCGCCGAC AAGCCGGTGA TCGTTGGCGG CGGCAAGCGC
GGCGTGGTGT CGGCGGCCTG CTACATCGCC CGCACCTTCG GGGTGCGCTC GGCGATGCCG
ATGTTCAAGG CGCTGGCGCT GTGCCCGTCG GCGACCGTGG TGCGGCCAGA CATGGCGAAG
TACGTCCGGG TCGGACGCGA GGTGCGGCAG GCGATGCGCG CGCTGACGCC GCTGGTCGAG
CCGCTGTCGA TCGACGAAGC ATTCCTCGAT CTGGCCGGCA CCGAGCGGAT GCACGGCATG
ATCCCGGCCA AGGTGCTGGC GAAATTCGCC CGTGAGGTCG AGCGCGACAT AGGCGTCACC
GCGTCGGTCG GACTGTCGTG CAACAAGTTC ATGGCCAAGA TCGCATCCGA TCTCGACAAA
CCGCGCGGCT TCGCGGCACT CGATCAGGAC GAAGCCCGCG AGATGCTGGC GCCTCGGCCG
GTCGGCTTCA TCTTCGGCGT CGGTCCGGCG ACGGCATCGC GGCTGGCGAG CCGCGGCTTC
CGCACCATCG CCGACCTGCA GCGCGCCGAC GAAATCGAGA TGATGCGGCA GTTCGGCGAC
GAAGGACGGC GGCTGTGGCG ACTGGCGCGC GGCATTGACG GCCGCAAGGT GGTGCCCGAT
CGCGGCGCCA AATCGATCTC CAACGAGACC ACCTTCGAGG ACGACATTCG CGACCTCGCG
ACGCTGGAGA AGATCTTGTG GCGGCTGTCG GAGAAGGTGT CGTCGCGGCT GAAAAGCGCC
GCCCTCTCCG GCTCGACCAT CACGTTGAAA CTGAAGACCG CCGACTTCCG CCAGCGGACC
CGGGCGCAGA CCATCCATGC GCCGACCCAG ATGGCGAACC GGATCTTCTC GGTGTCGCGT
GAGATGCTCA GCAAGGAAGT CGATGGCACC GCATTCCGCC TGATCGGCAC CGGCGTCAGC
GCTCTAACCG AGCAAACCGG CCCGACCGAA GACGATATGC TCGACCGCCG CTCAGCCCAC
GCCGAACGCG CAATCGACGA TCTGCGCAAG AAGTTCGGCG ACGCCGCCGT GATCCGCGGC
ATCGCGTTCG ATCGGGCGCA GAAGCCGCAG GGATGA
|
|---|
| Protein sequence | MSGDDPGRRT TPGFCRDCLA DQRAEARRCA ACGSPRLLRH RSLGTLSLAH IDCDAFYATV
EKRDNPALAD KPVIVGGGKR GVVSAACYIA RTFGVRSAMP MFKALALCPS ATVVRPDMAK
YVRVGREVRQ AMRALTPLVE PLSIDEAFLD LAGTERMHGM IPAKVLAKFA REVERDIGVT
ASVGLSCNKF MAKIASDLDK PRGFAALDQD EAREMLAPRP VGFIFGVGPA TASRLASRGF
RTIADLQRAD EIEMMRQFGD EGRRLWRLAR GIDGRKVVPD RGAKSISNET TFEDDIRDLA
TLEKILWRLS EKVSSRLKSA ALSGSTITLK LKTADFRQRT RAQTIHAPTQ MANRIFSVSR
EMLSKEVDGT AFRLIGTGVS ALTEQTGPTE DDMLDRRSAH AERAIDDLRK KFGDAAVIRG
IAFDRAQKPQ G
|
|---|
| |