| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3536 |
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| Symbol | |
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| ID | 6411210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3785539 |
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| End bp | 3787884 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642713414 |
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| Product | ribonuclease R |
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| Protein accession | YP_001992511 |
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| Protein GI | 192291906 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.589347 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCAAGC CGCGCGACGC GAAGTTTCCG GACAAGGCCA CTCTCCTCGC CTTCATCCGC
GCCCACCCCG GCAAAGTCGG GACCCGGGAG ATCGCGCGCG AATACGGCCT GAAGAATGCC
GATCGCGCCG AACTGAAGCG GATGCTGCGC GAACTCGCCG ACGGCGGCAG TATTCGCAAG
AGCGGCCGCC GCAAAGTGTC GGAGCCGGCC ACGCTGCCGC CGACCCTGCT GGCGGACATC
GTCTCGCGCG ATGCCGACGG CGAGCTGATC GCCACTCCGT CCGAGTGGGA CGAGCAGGAC
GGCGACGCCC CTAAGATCCT CATTCATACG CCACGCCGGA TCAAGCCCGG CACCGCAGCC
GGCGTCGGTG ATCGCGCGCT GCTGCATGTC GAAGCCGCAG ACTCACGCGA GGCCGGCCCC
GCTTATGTCG GCCGGGTCAT CCGTGTGCTC GAACGCGGCA AGGCGCGTAT CCTTGGTATC
TTCCGCGCGC TGCCGCAGGG CGGCGGCCGG ATGGTGCCAG TCGACAAGAA GCAGGCCGGG
CGTGAACTCA ACATCGCGGC GCATGATGCC GGAGGGGCCC AGGACGGCGA TCTCGTCAGC
GTCGATCTGA TCCGCACCCG CAGCTTCGGC CTCGCCTCCG GCCGGGTGAA GGAACGGCTC
GGCTCGCTCG CCAGCGAAAA GGCGATCAGC CTGATCGCGA TCCACACCCA CGACATTCCG
CAGGATTTCT CCTCGGCTGC AATCAGCGAG TCGGAAGCTG CACAGCCGGC GACGCTATCC
GGCCGCGAAG ACTGGCGCGA GCTACCGCTG GTGACGATCG ATCCGCCGGA CGCCAAGGAC
CACGACGACG CCGTCCATGC CGCGCCTGAT CCTGATCCGA ACAACAAAGG CGGCGTGATC
CTGCACGTCG CGATCGCCGA CGTCGCCTAC TACGTGCGCC CCGGCTCGGC GCTCGATCGC
GACGCGCTGC GCCGCGGCAA TTCGGTGTAC TTTCCCGACC GCGTCGTTCC GATGCTGCCG
GAACGGATCT CCAACGATCT GTGTTCGCTG AAACCAGGTC AGCCCCGCGG CGCCCTCGCC
GTCCGCATGG TGATCGACGC GCAAGGGCGC AAGCGCTCGC ATTCATTCCA CCGCGTGCTG
ATGCGTTCGG CCGCGAAGCT GAGCTACGCG CAGGCCCAGG CCGCGATCGA CGGCAAGCCC
GACGACGTCA CCGGCCCGCT GCTCGAGACC ATCCTGAAGC CGCTGTACGA CGCCTATGCG
GTGGTCAAAC GCGGCCGCGA CGAGCGTGAT CCGCTCGACC TCGATCTACC CGAGCGCAAG
ATCATCCTGA AGCCGGACGG TACCGTCGAC CGCGTCATCG TGCCGGAACG GCTCGATGCG
CACCGGTTGA TCGAGGAGTT CATGATCCTC GCCAACGTGG CCGCCGCCGA GATGCTGGAG
AAGAAGGCGC TGCCGCTGAT CTACCGGGTA CACGACGAGC CTAGCGTCGA GAAGGTCCAC
AACCTCGTCG ACTTCCTGAA GACGCTCGAT CTGTCGTTCG CCAAAGGCGG CGCGCTGCGG
CCGGCGCAGT TCAACCGCAT CCTGGCGATG GTCAAAGGCG AAGACTCCGA GCCGCTGGTG
AACGAGGTGG TGTTGCGCTC GCAGGCGCAA GCCGAATACA GCTCCGAGAA CTACGGCCAT
TTCGGCCTCA ATCTGCGGCG CTACGCGCAC TTCACCTCGC CGATCCGCCG CTACGCCGAC
CTCGTTGTGC ACCGCGCACT GATCCGCGCG CTCGATCTTG GCGACGGCGC GCTGCCGCCG
AGCGAGACCA CCGAGACTCT GGCAGAGGTT GCGGCGCAGA TCTCGCTCAC CGAGCGGCGC
GCGATGAAGG CCGAGCGCGA GACCGTCGAC CGGCTGATCG CGCATCATCT CGCCGACCGG
ATCGGCGCAA CGTTCCAGGG CCGCGTCTCG GGCGTCACCA AGGCCGGCCT GTTCGTCAAG
CTGAGCGACA CCGGCGCCGA CGGGCTGATC CCGATCCGCT CGCTCGGCGA CGAGTATTAC
AACTACGACG AAACCCGTCA CGCGCTCATC GGCTCGCGCA GCGGGGCCAT GCACCGGCTG
GGGGATGTCG TCGACGTCAA GCTGGTGGAA GCTGCACCCG TCGCCGGCGC GCTTCGGTTC
GAACTGATCG GCAATGCCAA CGTTGAATTC ACGCACCGCA AGACTGCACG CAAGACCAAG
GGGACGAGCA AGGCCAAGCT GAAAACCGAG AGCGGCAAGT CGGCGCGCGC CAAGCCCGGA
CGGGCGAAGG CGCGGAAAGC GGCGAAGCCG AAACAAAAAA CCAAGTCCGG GAGAGGAAAA
CGCTGA
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| Protein sequence | MSKPRDAKFP DKATLLAFIR AHPGKVGTRE IAREYGLKNA DRAELKRMLR ELADGGSIRK
SGRRKVSEPA TLPPTLLADI VSRDADGELI ATPSEWDEQD GDAPKILIHT PRRIKPGTAA
GVGDRALLHV EAADSREAGP AYVGRVIRVL ERGKARILGI FRALPQGGGR MVPVDKKQAG
RELNIAAHDA GGAQDGDLVS VDLIRTRSFG LASGRVKERL GSLASEKAIS LIAIHTHDIP
QDFSSAAISE SEAAQPATLS GREDWRELPL VTIDPPDAKD HDDAVHAAPD PDPNNKGGVI
LHVAIADVAY YVRPGSALDR DALRRGNSVY FPDRVVPMLP ERISNDLCSL KPGQPRGALA
VRMVIDAQGR KRSHSFHRVL MRSAAKLSYA QAQAAIDGKP DDVTGPLLET ILKPLYDAYA
VVKRGRDERD PLDLDLPERK IILKPDGTVD RVIVPERLDA HRLIEEFMIL ANVAAAEMLE
KKALPLIYRV HDEPSVEKVH NLVDFLKTLD LSFAKGGALR PAQFNRILAM VKGEDSEPLV
NEVVLRSQAQ AEYSSENYGH FGLNLRRYAH FTSPIRRYAD LVVHRALIRA LDLGDGALPP
SETTETLAEV AAQISLTERR AMKAERETVD RLIAHHLADR IGATFQGRVS GVTKAGLFVK
LSDTGADGLI PIRSLGDEYY NYDETRHALI GSRSGAMHRL GDVVDVKLVE AAPVAGALRF
ELIGNANVEF THRKTARKTK GTSKAKLKTE SGKSARAKPG RAKARKAAKP KQKTKSGRGK
R
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