| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3517 |
|---|
| Symbol | gatA |
|---|
| ID | 6411191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3765599 |
|---|
| End bp | 3767077 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642713396 |
|---|
| Product | aspartyl/glutamyl-tRNA amidotransferase subunit A |
|---|
| Protein accession | YP_001992493 |
|---|
| Protein GI | 192291888 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | [TIGR00132] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.324726 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC TGACTTCGCT GACGCTGGCT GAGGCCCGCG ATGGCCTCGC AAACAAGTCC
TTCACCGCGG TCGAACTGAC CGACGCCCAC CTCGCCGCGA TCGAAGCCGC GCGCGTGCTC
AACGCCTACG TGCTGGAGAC GCCGGATCAG GCGCGCCAGA TGGCGAAGGC CGCGGACGCG
CAGATCGCAA AGGGCGAGGG CGGACCGCTG GCCGGGCTGC CGCTCGGCAT CAAGGACCTG
TTCGCCACCA AGGGCGAGCG CACCACCGCG TGCTCGAAGA TCCTCGGAGA CTTCAAGCCG
ACCTACGAGT CGACCGTGAC GACGCAGCTG TGGCGCGACG GCGCGGTGCT GCTCGGCAAG
CTCAACAACG ACGAATTCGC GATGGGCTCG TCGAACGAGA CCTCGTGCTT CGGCCCGGTG
ATCAATCCCT GGCGCCGTGC CGGCTCCGAC GCCAAGCTGG TGCCGGGTGG CTCGTCGGGT
GGCTCGGCCG CTGCGGTCGC GGCAGGTCTG TGCCTCGGCG CTACCGCGAC CGACACCGGC
GGCTCGATCC GCCAGCCGGC GGCGTTCACC GGCACGGTCG GCATCAAGCC GACTTACGGC
CGCTGCTCGC GCTGGGGCAT CGTCGCGTTC GCATCCTCTC TCGATCAGGC GGGCCCGATC
GCCCGCACGG TGCGCGACAG CGCGATCCTG CTGCGATCAA TGGCCGGCCA TGATCCGAAG
GACACCACCT CGGTCGATCG GCCGGTGCCC AATTACGAGG CCGCGGTCGG CGGATCGGTG
AAGGGCATGA AGATCGGCAT TCCGAAGGAG TACCGGCTCG ACGGCATGCC GGCCGAGATC
GAGAAGCTGT GGAGCCAGGG TGCCGAGTGG CTGAAGGCCG CGGGCGCTGA GCTCGTCGAG
GTGTCGCTGC CGCACACCAA ATACGCGCTG CCGGCCTATT ATATCGTGGC GCCGGCGGAG
GCCTCTTCGA ACCTCGCGCG TTATGACGGC GTTCGCTACG GTGCGCGCGT CAACGGCCGC
AACATCATCG AGATGTACGA GAACACGCGC GCTGCCGGCT TCGGCGCCGA GGTGAAGCGC
CGCATCATGA TCGGCACTTA CGTGCTGTCA GCCGGCTATT ACGACGCGTA CTATCTGCGC
GCCCAGAAGG TGCGCACGCT GATCAAGCGC GACTTCGAGC AGTGCTTCGA TCAGGGCGTC
TCCGCGATCC TGACGCCGGC GACGCCCTCG GCGGCGTTCG GCATCGGCGA GAAGGGCGGC
GCCGATCCGG TCGAGATGTA TCTGAACGAC ATCTTCACCG TGACGGTGAA CATGGCCGGC
CTGCCTGGCA TCGCCGTCCC GGCGGGAAGC GACTCCCAAG GTTTGCCGCT CGGACTGCAG
CTGATCGGCC GGCCGTTCGA CGAGGACACC TTGTTCTCGC TCGGCGAGGT GATCGAGCAG
GCAGCCGGAC GGTTCACGCC GGCCAAGTGG TGGGCCTGA
|
|---|
| Protein sequence | MTDLTSLTLA EARDGLANKS FTAVELTDAH LAAIEAARVL NAYVLETPDQ ARQMAKAADA
QIAKGEGGPL AGLPLGIKDL FATKGERTTA CSKILGDFKP TYESTVTTQL WRDGAVLLGK
LNNDEFAMGS SNETSCFGPV INPWRRAGSD AKLVPGGSSG GSAAAVAAGL CLGATATDTG
GSIRQPAAFT GTVGIKPTYG RCSRWGIVAF ASSLDQAGPI ARTVRDSAIL LRSMAGHDPK
DTTSVDRPVP NYEAAVGGSV KGMKIGIPKE YRLDGMPAEI EKLWSQGAEW LKAAGAELVE
VSLPHTKYAL PAYYIVAPAE ASSNLARYDG VRYGARVNGR NIIEMYENTR AAGFGAEVKR
RIMIGTYVLS AGYYDAYYLR AQKVRTLIKR DFEQCFDQGV SAILTPATPS AAFGIGEKGG
ADPVEMYLND IFTVTVNMAG LPGIAVPAGS DSQGLPLGLQ LIGRPFDEDT LFSLGEVIEQ
AAGRFTPAKW WA
|
|---|
| |