Gene Rpal_3514 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3514 
Symbol 
ID6411188 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp3761231 
End bp3762793 
Gene Length1563 bp 
Protein Length520 aa 
Translation table11 
GC content60% 
IMG OID642713393 
Productglutamyl-tRNA(Gln) amidotransferase, B subunit 
Protein accessionYP_001992490 
Protein GI192291885 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 
TIGRFAM ID[TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.338871 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCAC CTGTCAAACC TTCGAAACTC ATCAAGGGCG CCACCGGCGA TTGGGAAGTC 
GTGATCGGGC TGGAGATCCA TGCCCAGGTC TCTTCCAATG CCAAGCTGTT CTCCGGCGCG
GCTACCGCGT TCGGCGGCGA TCAGAACACC CACGTGTCGC TGGTCGACGC CGCGATGCCC
GGCATGCTGC CGGTGATCAA CGAGGAGTGC GTGCGCCAGG CGATCCGCTC CGGGCTCGGG
CTGAACGCCA AGATCCATCT GCGCTCGGTG TTCGACCGTA AGAACTATTT CTACCCGGAC
CTGCCGCAGG GCTACCAGAT CAGCCAGTAC AAATCGCCGA TCGTCGGTGA GGGCGAAGTG
GTGGTCGACC TGCCGGACGG CGACAGCATC ACCGTCGGCA TCGAGCGGCT GCATCTCGAA
CAGGACGCCG GAAAGCTGCT GCACGACCAG CATCCGACTT CGACATTCGT CGACCTCAAC
CGCTCCGGCG TCGCGCTGAT GGAGATCGTC TCCAAGCCGG ACCTCCGCTC GTCCGAACAG
GCCAAGGCTT ACGTGTCGAA GCTGCGCACG ATCATGCGCT ATCTCGGCAC CTGCGATGGC
GACATGGAGA AGGGCAGCCT GCGCGCCGAC GTCAACGTCT CGGTGCGCCG TCCGGGCGAG
CCTTACGGCA CCCGCTGCGA GATCAAGAAC GTCAACTCGA TCCGCTTCAT CGGTCAGGCG
ATCGAATACG AAGCGCAGCG CCAGATCGGC ATTCTGGAAG ACGGCGGAAA GATCGACCAG
GAGACCCGGC TGTTCGACGC CAACAAGGGC GAGACCCGGT CGATGCGGTC GAAGGAAGAG
GCGCACGACT ATCGCTACTT CCCCGATCCG GATCTGCTGC CGCTGGAATT CACCCAGGCC
TATGTCGACG AGTTGAAGTC CGGCCTGCCG GAATTGCCCG ACGCCAAAAA AGCGCGCTAT
CTAAAGGAGT TTTCGCTTTC CGACCAAGAT GCAGACGTGT TGGTCGCGGA ACCGGAACGA
GCTGCCTATT TCGAGAAGAT GGTAGCCAAC GGTGCGGAGC CTAAAGCTGC GGCCAACTGG
TTTATCAATG AATACCTCGG CCAAATCAGC AAGGTCGAGG AGAGCGATAG CGTGCCTGCC
GTGGTCGAAC CGACCATCTC TGTTTCTGTT GGACACGGTT CAACCTCAAG GTCCGGGCAG
ATTACGATCA ATTGGACTGC TCCTGAGGCA AACAGCGCAA TTGTGAGGAT GGTCACTTCC
AACCTCATCA GCGGAAAGTC AGCGAAGGCA CTGCTCGGGT TGGTGATTGA AATTGGGCCG
GTCGCCGATC CCGATGACGT CAAAACGATT GTGGAGCACC TAAATCTAAA ACAAGTCACC
GATCTGTCGG CGATCGAGAA GGTGGTCGAC GATATCGTCG CCGCCAATCC AGATAAGGTG
GCACAAGTCG TCGCCAAGCC CGCGATGCTC GGCTGGTTCG TCGGCCAGGT GATGAAATCT
TCCGGCGGCA AGGCCAATCC GCAGGCGGTC AACGATCTGC TGAAGCGCAA GCTCGGCCTC
TGA
 
Protein sequence
MNAPVKPSKL IKGATGDWEV VIGLEIHAQV SSNAKLFSGA ATAFGGDQNT HVSLVDAAMP 
GMLPVINEEC VRQAIRSGLG LNAKIHLRSV FDRKNYFYPD LPQGYQISQY KSPIVGEGEV
VVDLPDGDSI TVGIERLHLE QDAGKLLHDQ HPTSTFVDLN RSGVALMEIV SKPDLRSSEQ
AKAYVSKLRT IMRYLGTCDG DMEKGSLRAD VNVSVRRPGE PYGTRCEIKN VNSIRFIGQA
IEYEAQRQIG ILEDGGKIDQ ETRLFDANKG ETRSMRSKEE AHDYRYFPDP DLLPLEFTQA
YVDELKSGLP ELPDAKKARY LKEFSLSDQD ADVLVAEPER AAYFEKMVAN GAEPKAAANW
FINEYLGQIS KVEESDSVPA VVEPTISVSV GHGSTSRSGQ ITINWTAPEA NSAIVRMVTS
NLISGKSAKA LLGLVIEIGP VADPDDVKTI VEHLNLKQVT DLSAIEKVVD DIVAANPDKV
AQVVAKPAML GWFVGQVMKS SGGKANPQAV NDLLKRKLGL