| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3508 |
|---|
| Symbol | panB |
|---|
| ID | 6411182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3756438 |
|---|
| End bp | 3757262 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642713387 |
|---|
| Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| Protein accession | YP_001992484 |
|---|
| Protein GI | 192291879 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
|---|
| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.474885 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTTC AATCGACCAT TCGGCGCAAG ACCGCGCCGG ACATCCGCGC GCGCAAGGGC
GGCGATCCGA TCGTGATGCT GACCTCGTAT CACGCCCACA CCGCGTCGCT GGTCGACCGT
TACTGCGACG CCATCCTGGT CGGCGACTCG CTCGGCAACG TCATGCACGG CTTCGAGACC
ACCGTGCCGG TGACGCTCGA GATGATGATC CTGCAGGGCC ACGCGGTGAT GCGCGGCTCG
CAGCACGCGC TGGTCGTGGT CGACATGCCG TTCGGCTCGT ACGAAGCCTC GAAGGAGCAG
GCCTTCCACT CCGCCGCGCG TATTCTCAAA GAGACTCACT GCGGCGCGGT GAAGCTCGAG
GGCGGCGTGC GCATGGCCGA GACCATCAGG TTCCTCACCG AGCGCGGCAT TCCGGTGATG
GGCCACATTG GTCTGACGCC GCAGTCGATC AACACGCTGG GCTCGTTCCG CGCGCAGGGC
CGCGAGGAGG GAAGCTGGGA GCCGATCGAA GCCGACGCCA AGGCAGTCGC CGAAGCCGGC
GCGTTCTCGG TCGTGGTCGA AGCGGTCGCC GAACCGCTCG GCCGCAAGAT CACCGAGACG
ATTGCGATCC CGACTATCGG CATCGGCGCC AGCGCCGCCT GCGATGGTCA GGTGCTGGTG
CTCGAAGACA TGCTCGGCCT GTCGCCGAAG CCGCCGAAAT TCGTCAAGCG CTATGGCGAT
CTCGGCCCCG GCATCGAAGC GGCGATCAAG GGCTATGCCG AGGAGGTCCG TTCGCGGGCT
TTCCCTGGGC CCGAGCACGT TTACGGAATG AAATCGAAGG CGTGA
|
|---|
| Protein sequence | MSVQSTIRRK TAPDIRARKG GDPIVMLTSY HAHTASLVDR YCDAILVGDS LGNVMHGFET
TVPVTLEMMI LQGHAVMRGS QHALVVVDMP FGSYEASKEQ AFHSAARILK ETHCGAVKLE
GGVRMAETIR FLTERGIPVM GHIGLTPQSI NTLGSFRAQG REEGSWEPIE ADAKAVAEAG
AFSVVVEAVA EPLGRKITET IAIPTIGIGA SAACDGQVLV LEDMLGLSPK PPKFVKRYGD
LGPGIEAAIK GYAEEVRSRA FPGPEHVYGM KSKA
|
|---|
| |