| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3502 |
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| Symbol | |
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| ID | 6411176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3750212 |
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| End bp | 3750955 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642713381 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001992478 |
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| Protein GI | 192291873 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.176683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAAC CTCTCGCCTC CCGCATTGCT CTCGTCACCG GCGCCTCGCG CGGCATCGGC
TATGCCACCG CCAAGGCGCT CGCCAAGGCT GGTGCGCACG TCATCGCCGT CGCCCGCACC
CAGGGTGGCC TCGAAGAGCT CGACGACGAA GTGCGTAAGG ACGGCGGTCA TCCGCTGACG
CTGGTCCCGC TCGATCTCAC CGACTACCAG GCCATCGGCC GCCTCGGCGG CACGATCTAC
GAACGCCACG GCAAGCTCGA CGTCCTGGTC GGCAACGCCG GTATCGGCGG GCCGTCCTCG
CCGCTCGGCC ATATCGAGCT GAAGCCTTGG CTCGACGTCA TCGGCATCAA TCTGAATGTG
AACTTCCAGC TGGTCCGCTG CATGGAACCG CTGCTGCGCG CCTCCGACGC CGGCCGCGCC
GTATTCCTGA CCTCGCGCGC CGGCGGTAAG GCACCGGGCT ATCGCGGCCC CTACGCGGCA
TCGAAGGCGG CACTGGAAAC GCTGGTGCAG GTGTGGGCCA AGGAAGTGGT CAACACCACG
CCGATCCGCA TCAACCTGTT CGATCCCGGT CCGACCCGCA CCAAGCTGCG CGCCAGCGTG
ATGCCGGGCG AAGATCCCGA GACCCTGCCG ACGCCGGACC AGGCCGCCGA ACTGCTGCTG
CCGCTGTGCC TGCCGTCCTT TACCGAAACC GGCAAGCTGT TCGACGGCCC CTCTCGCACC
CTGAAAGACC CCCAGGCCGA TTGA
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| Protein sequence | MTQPLASRIA LVTGASRGIG YATAKALAKA GAHVIAVART QGGLEELDDE VRKDGGHPLT
LVPLDLTDYQ AIGRLGGTIY ERHGKLDVLV GNAGIGGPSS PLGHIELKPW LDVIGINLNV
NFQLVRCMEP LLRASDAGRA VFLTSRAGGK APGYRGPYAA SKAALETLVQ VWAKEVVNTT
PIRINLFDPG PTRTKLRASV MPGEDPETLP TPDQAAELLL PLCLPSFTET GKLFDGPSRT
LKDPQAD
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