Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3449 |
Symbol | |
ID | 6411123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 3690727 |
End bp | 3691665 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642713328 |
Product | polysaccharide deacetylase |
Protein accession | YP_001992425 |
Protein GI | 192291820 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.282005 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGATAG CAGCAGCTTT GATCGTTGCA GGTGTGGTGT CAGTCGGGAC GACCGCGGCC TTCGCGCAGG CACCGAAGTC TCCCGCGCCC GCCGCTCCGC AGGCCACCCC AGCTCCGGCG CCCGCCCCGC AACCGGCGGC CGCGGCCAAG CCGGTCTGCG CCAATCCGGA CGCGCTCGGC GTCGGCCGCA TCGTCGAGAT CGACACCACC GGCGGCCCCG GTTTCGGCTT CGAGCATTTC AAGCAACTCG ACTTCCTGCG TGACAAGGAA GTGGTGCTGA CGTTCGACGA CGGCCCCTGG CCGGTCAACA CCCCGGCAGT GCTGAAAGCG CTCGGCGACC AGTGCACCAA GGGGATCTTC TTCCCGATCG GCAAGCACGC CACCTATCAT CCCGAAATCC TCAAGCAGGT CGCCGCCGCC GGCCACACCG TAGGCTCGCA CACCTGGTCG CACGCCAATC TCGCCAACAA GAAGTTGACC GAACAGCAGG CCAAGGACGA GATCGAAAAG GGGTTCGCAG CGGTGAAGTG GGCGATCGGC ACCGCACCGT CGCCGTTCTT CCGCTTCCCG GCCCTGCAGC ATCCGCCGGC GCTGGTGACC TATCTCGGCA CCCGCAATGT CGCGATGTTC TCCTGCGACA TCGACTCGTT CGACTTCAAG GTGCGCAAGC CGCAGCAGGT CGTCGACAAC GTGATGAACA AGCTCGACAA GCTTGGCAAA GGCATCATCC TGATGCACGA CTTCCAGAAG AGCACTGCCG AGGCATTGCC GGAGCTGCTG CGGCGCCTGA AGGCCGGCGG CTACAAGGTG GTGCAGATGC GCGCCAAGGC GCCGGTGCAG ACGATGCCGC AGTACGACGA GGAGCTCGCC AAGAGCAATC CGCTGCCGAC GGTGAGCACC CGGCCGGTCA GCGCCGTCGT GCAGACGATC TCCGAATAA
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Protein sequence | MRIAAALIVA GVVSVGTTAA FAQAPKSPAP AAPQATPAPA PAPQPAAAAK PVCANPDALG VGRIVEIDTT GGPGFGFEHF KQLDFLRDKE VVLTFDDGPW PVNTPAVLKA LGDQCTKGIF FPIGKHATYH PEILKQVAAA GHTVGSHTWS HANLANKKLT EQQAKDEIEK GFAAVKWAIG TAPSPFFRFP ALQHPPALVT YLGTRNVAMF SCDIDSFDFK VRKPQQVVDN VMNKLDKLGK GIILMHDFQK STAEALPELL RRLKAGGYKV VQMRAKAPVQ TMPQYDEELA KSNPLPTVST RPVSAVVQTI SE
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