Gene Rpal_3449 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3449 
Symbol 
ID6411123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp3690727 
End bp3691665 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content65% 
IMG OID642713328 
Productpolysaccharide deacetylase 
Protein accessionYP_001992425 
Protein GI192291820 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.282005 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGATAG CAGCAGCTTT GATCGTTGCA GGTGTGGTGT CAGTCGGGAC GACCGCGGCC 
TTCGCGCAGG CACCGAAGTC TCCCGCGCCC GCCGCTCCGC AGGCCACCCC AGCTCCGGCG
CCCGCCCCGC AACCGGCGGC CGCGGCCAAG CCGGTCTGCG CCAATCCGGA CGCGCTCGGC
GTCGGCCGCA TCGTCGAGAT CGACACCACC GGCGGCCCCG GTTTCGGCTT CGAGCATTTC
AAGCAACTCG ACTTCCTGCG TGACAAGGAA GTGGTGCTGA CGTTCGACGA CGGCCCCTGG
CCGGTCAACA CCCCGGCAGT GCTGAAAGCG CTCGGCGACC AGTGCACCAA GGGGATCTTC
TTCCCGATCG GCAAGCACGC CACCTATCAT CCCGAAATCC TCAAGCAGGT CGCCGCCGCC
GGCCACACCG TAGGCTCGCA CACCTGGTCG CACGCCAATC TCGCCAACAA GAAGTTGACC
GAACAGCAGG CCAAGGACGA GATCGAAAAG GGGTTCGCAG CGGTGAAGTG GGCGATCGGC
ACCGCACCGT CGCCGTTCTT CCGCTTCCCG GCCCTGCAGC ATCCGCCGGC GCTGGTGACC
TATCTCGGCA CCCGCAATGT CGCGATGTTC TCCTGCGACA TCGACTCGTT CGACTTCAAG
GTGCGCAAGC CGCAGCAGGT CGTCGACAAC GTGATGAACA AGCTCGACAA GCTTGGCAAA
GGCATCATCC TGATGCACGA CTTCCAGAAG AGCACTGCCG AGGCATTGCC GGAGCTGCTG
CGGCGCCTGA AGGCCGGCGG CTACAAGGTG GTGCAGATGC GCGCCAAGGC GCCGGTGCAG
ACGATGCCGC AGTACGACGA GGAGCTCGCC AAGAGCAATC CGCTGCCGAC GGTGAGCACC
CGGCCGGTCA GCGCCGTCGT GCAGACGATC TCCGAATAA
 
Protein sequence
MRIAAALIVA GVVSVGTTAA FAQAPKSPAP AAPQATPAPA PAPQPAAAAK PVCANPDALG 
VGRIVEIDTT GGPGFGFEHF KQLDFLRDKE VVLTFDDGPW PVNTPAVLKA LGDQCTKGIF
FPIGKHATYH PEILKQVAAA GHTVGSHTWS HANLANKKLT EQQAKDEIEK GFAAVKWAIG
TAPSPFFRFP ALQHPPALVT YLGTRNVAMF SCDIDSFDFK VRKPQQVVDN VMNKLDKLGK
GIILMHDFQK STAEALPELL RRLKAGGYKV VQMRAKAPVQ TMPQYDEELA KSNPLPTVST
RPVSAVVQTI SE