Gene Rpal_3429 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3429 
Symbol 
ID6411103 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp3673409 
End bp3674608 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content67% 
IMG OID642713309 
Productefflux transporter, RND family, MFP subunit 
Protein accessionYP_001992406 
Protein GI192291801 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGAATA CACTTGTTCG GAATGTCGCG CTGGGTGCCG GGGTTGTGGC GGTTTCGGTG 
GCGCTGGTCG GCGGCGCAGC GCTGATCGGC CGCCCTGGTG GGGCGCTTGC CGAAACCACC
GCGGCGCCTC CGCCGGCGGT GCCGGTTTCG GTGGCGCTCG TCGAATCCAA GGCGACCACG
CCGTCCGACG CATTCTCCGG CCGGCTGGAG GCGATCGAGC GGGTCGAGAT CCGCTCGCGG
GTCGCCGGTG CCGTCCAGCA AATCCAGTTC AGAGAAGGCG CTCTGGTAAA CAAGGGCGAC
CTGTTGGTCC GGATCGATCC GTCGCTGTAC GCCGCTGAGG TCGATCGCGC CCAGGCGCAG
TTGTCGGCGG CCCGCGCGCG CGTCGTCTTC ACCAAGGCCG ACGTCGAGCG CAGCCAGCAG
CTCTCCAGCT CCAGCATCAC CCAGCGCGAG GTCGACAACC GCCTCAATGC CTATCGTGAG
GCGGAGGCGA ACCTCAGATC GGCCGAAGCG GCGCTGAAGA CTGCCGAGCT GAACCTCAGC
TATACTGAGA TCAGCGCCCC GGTGTCCGGC CGGGTCGGCA AGGTAGAGAT CACCGTCGGC
AATCTGATCG CCGCCGGCCC GAACTCGCCG CTGCTCACCA CGTTGGTTTC GGTCAATCCG
ATCTATGCCA GCTTCAATGC CGACGAGCAG GTGGTGACCC GCGCGCTGAA GACCCTCGCG
GACGAAAACA CCCCGGGTGC GATCGAACGG ATTCCGGTCG AGATGACGAC CGTCGCGGGA
GGGGCGCCGG TGAAGGGCAA GATGCAGTTC ATCGACAACC AGGTCGATCC GCGCTCCGGC
ACGGTGCGGG TGCGTGCGGT ATTCGACAAT GCCGACGGCC GGCTGATGCC GGGCCAGTTC
GCGCGGCTGT CGATGGGACA GCCGAAGCCG GAAGCAGCGC TGTTGGTCAG CGAGCGTGCG
GTCGGCACCG ACCAGAACAA GAAGTTCGTG ATGGTGGTCG ATGCCCAGAA CCATGCCGAA
TACCGTGAAG TGACGCTGGG GGCCTCGGTC GACGGCCTGC GGGTGGTGGC TTCCGGACTC
AGGGCCGGCG AACGCATCGT GGTCAACGGC CTGCAGCGGG TCCGTCCCGG CGTCACCATC
AAGCCCGAGA CGGTGGCGAT GGATGCCGCC GCCTCGAGCA AGACGGTCGC GCAGAACTAA
 
Protein sequence
MANTLVRNVA LGAGVVAVSV ALVGGAALIG RPGGALAETT AAPPPAVPVS VALVESKATT 
PSDAFSGRLE AIERVEIRSR VAGAVQQIQF REGALVNKGD LLVRIDPSLY AAEVDRAQAQ
LSAARARVVF TKADVERSQQ LSSSSITQRE VDNRLNAYRE AEANLRSAEA ALKTAELNLS
YTEISAPVSG RVGKVEITVG NLIAAGPNSP LLTTLVSVNP IYASFNADEQ VVTRALKTLA
DENTPGAIER IPVEMTTVAG GAPVKGKMQF IDNQVDPRSG TVRVRAVFDN ADGRLMPGQF
ARLSMGQPKP EAALLVSERA VGTDQNKKFV MVVDAQNHAE YREVTLGASV DGLRVVASGL
RAGERIVVNG LQRVRPGVTI KPETVAMDAA ASSKTVAQN